PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g18260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 227aa    MW: 25829.5 Da    PI: 5.7624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g18260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.2e-15550148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       CA10g18260  5 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 50
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-22155IPR009057Homeodomain-like
SuperFamilySSF466891.22E-13158IPR009057Homeodomain-like
PROSITE profilePS5129424.882154IPR017930Myb domain
SMARTSM007173.5E-13452IPR001005SANT/Myb domain
PfamPF002493.2E-13550IPR001005SANT/Myb domain
CDDcd001671.42E-8749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
PGIKRGNFTP HEEGMIIHLQ ALLGNKWAAI ASYLPQRTDN DIKNYWNTHL KKKLKKLQTE  60
LDSHNLAPLL PNNNNNNNIN YDNHHQFSWQ LSVNNNDKQG ISSNSSSSSL YASSTENISR  120
LLEGWMRSSP NNPSRRNNID HDHDDEMLHV AQKNDQDQEI VKSTCEENEN SWIIPKEKSS  180
NCESNGVVVV DHGKTSPPPF TYLEKWLLEE NGGQVEELME LPMIFT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2496962e-74KP249696.1 Solanum lycopersicum R2R3 MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555048.11e-133PREDICTED: transcription factor MYB30-like, partial
SwissprotB3VTV75e-53MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2G2YNB81e-139A0A2G2YNB8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000722723e-92(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-36myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]