PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g17560

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 204aa MW: 22585.7 Da PI: 10.4255

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g17560	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	85.9	6e-27	39	93	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR+ Rak e e+kl k rkp+lh SRh hA+rRpRg gGrF CA10g17560 39 TPIFVNAKQYHGILRRRKLRAK-EMENKL-LKPRKPFLHLSRHLHAMRRPRGGGGRF 93 7******************9.566999.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.5E-30	36	96	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.278	37	96	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-20	40	62	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-23	40	93	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-20	70	93	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSSLSMQSYN VDYQGHFYQC FGQPLGRIML PLNLTSDETP IFVNAKQYHG ILRRRKLRAK 60 EMENKLLKPR KPFLHLSRHL HAMRRPRGGG GRFLNTRKAN GSMNNDANGT TKTSNMKCHP 120 TGSQISDISS FNSPKETTNR MSCNSSEVTS LYSRGSSFGT FPTHNSPSVD AFIDMMNTGH 180 DDILMASKWG SAAAASSCCN LKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-16	38	106	2	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254763	2e-52	AC254763.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-63a14 map 10, complete sequence.
GenBank	HG975522	2e-52	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016555012.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-4-like
Refseq	XP_016555013.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-4-like
Refseq	XP_016555014.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBL	A0A1U8F6Q7	1e-151	A0A1U8F6Q7_CAPAN; nuclear transcription factor Y subunit A-4-like
STRING	XP_009613978.1	4e-89	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-31	nuclear factor Y, subunit A10