PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g17160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Nin-like
Protein Properties Length: 337aa    MW: 37827.3 Da    PI: 4.9189
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g17160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK68.69e-22245294352
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G++RWP+Rki+s+
  CA10g17160 245 GKLRLKDFAGYLHLPIEIAAKKLNICPTVMKKVCRRDGLSRWPYRKINSI 294
                 68999*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.176232314IPR003035RWP-RK domain
PfamPF020426.3E-20247294IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDNPTAIVPY HDPFDDDSSL VQISLFDDEN PIIDGPWDNE PFSLFHENPP ILISDIGVSN  60
TDPILLQCSN YLVGNSTTNT EGGVPGTNYC STSHNCQILR EITHSDGLQI SKLDIYGTLG  120
KISHAVLEKY TMDFSSQTHK SSQIFDFSND STNSVKQFLV HYFEACKSEG YIVLLDPLCN  180
FYEALGVGSD GGDCFDIDSL LQLSPTTSRD FKMDQQEKRN ESEDNNSDVR HEKISLSAQQ  240
RERTGKLRLK DFAGYLHLPI EIAAKKLNIC PTVMKKVCRR DGLSRWPYRK INSIQRKISL  300
REKCLSSNHV EERASAKAAI AKLEQELDNI FEAFSN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544863.10.0PREDICTED: uncharacterized protein LOC107845121
TrEMBLA0A2G2VV870.0A0A2G2VV87_CAPBA; Uncharacterized protein
STRINGXP_009771409.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35052027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.12e-11Nin-like family protein