PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g12680
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 471aa    MW: 52616.4 Da    PI: 5.5347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g12680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038443466123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 + C+ C+++F +   L++H +  H
  CA10g12680 443 FACKTCNRTFGSENALESHSKAkH 466
                 78*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.801443470IPR007087Zinc finger, C2H2
SMARTSM003550.0051443466IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-6443467IPR007087Zinc finger, C2H2
PROSITE patternPS000280445466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
AEVKSGQPLS VQPGDDMILH LSQASLGEVK RDKGSEPVCL FVTIDGKKLV LGTLSTDKLP  60
QQQFDLIFDR DFELSHNWKN GSVYFFGYKT ANFEEYPFHQ IFQILFVSLT TFPWDTEEDD  120
ELYEDGSDEE IPLTIANNGK PEAKASAKDS APAKQKVTVV EPSKGAKVDD SDESSDDDLS  180
DDEDDSEMGE VCMSNILSML CTQKPIRTSL SLFINFQSNS QIVVFSTNFG FGFIFLKIMI  240
CIWYSESSLD LVFKNWSWKT RFQQEFSFDK GVAKQLCDKD ITRLSSTLGA FFPVKKYRLK  300
WNFLAASNFC KIEAIKLIIQ LFVLNYVARI LQKMMLHPYL THLSTFSNCP SNIVFFLQDD  360
SDEDQSDESE EETPEKAETS KKRPADSSAK APVLDKKKTK FTTPQKTDGK KGAVHVSTPH  420
PSKQAGKTPG NKPNQTPKSG GSFACKTCNR TFGSENALES HSKAKHSAGK *
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140291e-120BT014029.1 Lycopersicon esculentum clone 133091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543197.16e-83PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I65e-53HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A1U8E7K81e-81A0A1U8E7K8_CAPAN; histone deacetylase HDT1-like
STRINGSolyc10g085560.1.11e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-29histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]