PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g12460
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 694aa    MW: 77725 Da    PI: 6.1821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g12460genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24118219199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++pk +a+++         ++ +   l+++d +g+ We+++i+r+k++r++lt+GW++Fv++++L +gD++vF   ++++++l
  CA10g12460 118 FAKTLTQSDANNGGGFSVPKYCADTIfpllnyaADPPVQ--NLSVKDVHGKPWEFRHIFRGKPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RSENGKL 212
                 89*********************999*****97666666..6************************************************..4589999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  CA10g12460 213 CVGIRRA 219
                 *****97 PP
2Auxin_resp99.54.5e-33295377183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++k +Fev+++P +s++eF vk+++v++al+++++ GmRfkm feteds    ++Gt+++v+ +dp rWp+S+Wr L+
  CA10g12460 295 AANLAASKYPFEVTFYPHSSNPEFFVKASRVKAALQIPWCSGMRFKMPFETEDSMMSWFMGTISSVQVADPHRWPDSPWRILQ 377
                 7899****************************************************999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-37113221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-29113220IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-24116218No hitNo description
PROSITE profilePS5086313.733118220IPR003340B3 DNA binding domain
PfamPF023621.7E-22118219IPR003340B3 DNA binding domain
SMARTSM010198.2E-21118220IPR003340B3 DNA binding domain
PfamPF065074.7E-28295377IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MITFMDSRDE EEKCLDSQLW HACAGTMVKM PAVNSIVFYF PQGHAEHACA NVEFRNDIRI  60
PSYIPCRVSA ITYMAEQVTD EVFAKIRLTP ISHNEVDQIV DDEIAKIGLD NPDKFPSFAK  120
TLTQSDANNG GGFSVPKYCA DTIFPLLNYA ADPPVQNLSV KDVHGKPWEF RHIFRGKPRR  180
HLLTTGWSNF VNEKKLVAGD SIVFLRSENG KLCVGIRRAK KGIGNGPETP FQCIPPIDNF  240
FIPPIDNLAI PPRGGYSALL KDDENKLMRY ENTNSNVEIN LMNKGKVKAE SVIEAANLAA  300
SKYPFEVTFY PHSSNPEFFV KASRVKAALQ IPWCSGMRFK MPFETEDSMM SWFMGTISSV  360
QVADPHRWPD SPWRILQVTW DEPDLLQNVK CVNPWLVELV SNMSTIHFNP YAPPFQLPQR  420
SDFPHLPMPG LIRPSDFFNC LPNDTHVGMQ GARHAQYNLS LPDLHLDRLY SSLSHVGFPP  480
PHHVIASPRT SNSTTIPNPS ISDDISCLLT LGGSSQTMNK SDCEKVPQFK LFGQLIRTEQ  540
QISQSSSGDT GSPIRAVNSS LHGHGYKKGN ISEESGTSFD HCSLPDHLPC ESFQSEKNLE  600
MGHCEVFIES EDVGRTLDLS LLDSYEELYM DLSNMSGIKI SDMLNHVIYR DINGATKQLG  660
DEPFREFTKT SRRLTILTDA RSDNIGVTSR DNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-76139837388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543072.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_016543073.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2YLS10.0A0A2G2YLS1_CAPAN; Auxin response factor
STRINGXP_009605930.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]