PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g11710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 21796.9 Da PI: 9.8671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 26 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 r + ++E +l+++++k+lG++ W++Ia +++ gRt+ ++k++w+++l CA10g11710 26 RSDFDPDEVDLILRLHKLLGNRqvyfLWSLIAGRLP-GRTASDVKNYWNTHL 76 567899******************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.391 | 1 | 20 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-9 | 6 | 31 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.38E-16 | 6 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.036 | 21 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-9 | 25 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-11 | 27 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.29E-9 | 29 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 32 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MCTGLNRCRK SCRLRWLNYL RPHIKRSDFD PDEVDLILRL HKLLGNRQVY FLWSLIAGRL 60 PGRTASDVKN YWNTHLLRKL NATKSNNKYC RANNIITRNE IIRPQPQNFS SAMKNVSWCN 120 NKSITKSTVD KDETDKEIVV NICEKPTVET TSSMDQGIQW WTSLLENCNE IYKTQSLLNG 180 GGNSFQQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-14 | 6 | 81 | 39 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544713.1 | 1e-125 | PREDICTED: transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 3e-37 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2G2YLK7 | 1e-137 | A0A2G2YLK7_CAPAN; Transcription factor MYB1 | ||||
STRING | Solyc10g086250.1.1 | 2e-72 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-39 | myb domain protein 113 |
Publications ? help Back to Top | |||
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