PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g11690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21448.4 Da PI: 8.9116 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 22 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + ++E +l+++++k+lG++ I++ g Rt++++k++w++ CA10g11690 22 RGDFDPDEVDLILRLHKLLGNR-QFYIMKLPG--RTANDVKNFWNT 64 78999*****************.777887765..**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.16 | 1 | 16 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.82E-12 | 2 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-9 | 2 | 27 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.129 | 17 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-4 | 21 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-6 | 22 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-5 | 25 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 28 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
LNRCRKSCRL RWLNYLRPHI KRGDFDPDEV DLILRLHKLL GNRQFYIMKL PGRTANDVKN 60 FWNTRLLRKV NIAPINNKIG DNINTKNEII RPQPRNFSST MKNVSWCNNK SIINEANILE 120 NCNEIEEAIA TGTRTPLCKN ISSEKNCNEI DKTPCFLNGG GNATQQGQSD GGWDEFSMDD 180 IWNLLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-13 | 3 | 71 | 40 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU310399 | 4e-38 | EU310399.1 Solanum tuberosum chlorogenate inducer (Cai1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555303.1 | 1e-124 | PREDICTED: transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 7e-31 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2G2YLG5 | 1e-125 | A0A2G2YLG5_CAPAN; Transcription factor | ||||
STRING | Solyc10g086250.1.1 | 1e-51 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-33 | myb domain protein 113 |
Publications ? help Back to Top | |||
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