PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g11660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10044 Da PI: 11.6612 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.6e-08 | 9 | 32 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt +++k +w+++ CA10g11660 9 RWSLIAGRLP-GRTTNDVKKYWNTH 32 6*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.272 | 1 | 37 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 4 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-6 | 7 | 32 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-5 | 8 | 33 | No hit | No description |
SuperFamily | SSF46689 | 3.2E-7 | 8 | 38 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MLFYGSLIRW SLIAGRLPGR TTNDVKKYWN THFQKKLNTT IALHPPRQKI NNKGKAIIKN 60 EIIKTLPWNL SNTKKMLLIG TTITKVL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089542.1 | 1e-18 | transcription factor MYB113-like isoform X1 | ||||
TrEMBL | A0A2G2YLH9 | 4e-55 | A0A2G2YLH9_CAPAN; Uncharacterized protein | ||||
STRING | Solyc10g086250.1.1 | 9e-18 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-12 | myb domain protein 113 |