PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g11650 | ||||||||
Common Name | a | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 218aa MW: 25202.6 Da PI: 9.0029 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 22 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l CA10g11650 22 RGDFGWDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 67 6788899***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.16 | 1 | 16 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.96E-18 | 2 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-8 | 2 | 27 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.24 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 22 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 28 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.80E-9 | 28 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
LNRCRKSCRL RWLNYLRPHI KRGDFGWDEI DLILRLHKLL GNRWSLIAGR LPGRTANDVK 60 NYWNSHLQKK LITAPHRQER KYNTALKITT KNVLRPRPRT FSSSAKNNIS WCTNKSTVIT 120 NTLDKDERDK EIGLNICQKL TSETSSTIDD GVQWWTSLLE NCKEIEEDVA AVGIFEEKNK 180 LVPSLLHDEI NSLTMQQGQS DGWDDFSADI DLWNLLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-16 | 2 | 73 | 39 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ608992 | 0.0 | AJ608992.1 Capsicum annuum mRNA for R2R3 MYB transcription factor (a gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311547.1 | 1e-158 | transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 1e-40 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2G2YLG4 | 1e-157 | A0A2G2YLG4_CAPAN; Uncharacterized protein (Fragment) | ||||
STRING | Solyc10g086290.1.1 | 1e-94 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-43 | myb domain protein 113 |
Publications ? help Back to Top | |||
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