PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11420
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 324aa    MW: 35094.7 Da    PI: 9.2346
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11420genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.32.9e-373594362
      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                e+ +kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGa+r vPvGgg+r+nk+ss
  CA10g11420 35 EAVQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAIRSVPVGGGCRRNKRSS 94
                66789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-243587IPR003851Zinc finger, Dof-type
PfamPF027017.7E-323792IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7983892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
QVGYGIPNTQ LPSAPPQPTP PHPLATTPPP PRPHEAVQKC PRCESTNTKF CYFNNYSLSQ  60
PRHFCKTCRR YWTRGGAIRS VPVGGGCRRN KRSSTNSTTT SATKSSNNNN TSKSPASSQA  120
TNSGSTSNNS CTFSSQSSAA SLLGLMNPQI HPLRFMSPLG QLTDQHFTQN DNVTMNYSSF  180
SSSSPAPVIV ESTIESTNFQ LGMSNNLEQW RLHQQLASQF PYNLYGGLDS SSASGSGLYH  240
FHPTHYSSNE VGGGGGVISQ IRSKVSNPML TQLALMKMED NQDHLATMPR QFLGHENWPS  300
NGSHANWNEL SVSFSSSSTS NVL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544703.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A2G2YLF90.0A0A2G2YLF9_CAPAN; Uncharacterized protein
STRINGSolyc10g086440.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.14e-31DNA binding with one finger 2.4