PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA10g11030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 283aa MW: 32550.4 Da PI: 6.8689 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 1e-14 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky CA10g11030 144 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 188 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 23 | 77 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0033 | 27 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-8 | 29 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.106 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 139 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-18 | 140 | 192 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-13 | 141 | 191 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 141 | 188 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-12 | 144 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.94E-11 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MNSEMELFSP PQATYLRNSN WLFEENKGTK WTPEENKMFE DALALFDKET PDRLYYVASM 60 ISGKTVDDMM KQYRELLEDI ADIEAGLIPI PGYTTSSNSF TLEWINQDHE EGIFHDFNKQ 120 FYGPSGKRST SNRYSEHERK KGVPWTEEEH RQFLLGLKKY GKGDWRNISR NFVTTRTPTQ 180 VASHAQKYFI RQLSGGKDKR RSSIHDITTV NLTEMKSPSP ENHISSSSPD KSVPSPQKAL 240 CEYNFPNQEA VIGFKTYGLK LHEHGMHSVI LQGLQFGQYN TM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 28 | 100 | 8 | 80 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544679.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 5e-96 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G2YKR5 | 0.0 | A0A2G2YKR5_CAPAN; Transcription factor DIVARICATA | ||||
STRING | PGSC0003DMT400049209 | 1e-173 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-106 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|