PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 283aa    MW: 32550.4 Da    PI: 6.8689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-14144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
       CA10g11030 144 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 188
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4262377IPR017877Myb-like domain
SMARTSM007170.00332779IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-82984IPR009057Homeodomain-like
PROSITE profilePS5129421.106137193IPR017930Myb domain
SuperFamilySSF466891.79E-17139192IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-18140192IPR006447Myb domain, plants
SMARTSM007173.5E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12141188IPR009057Homeodomain-like
PfamPF002493.6E-12144188IPR001005SANT/Myb domain
CDDcd001679.94E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNSEMELFSP PQATYLRNSN WLFEENKGTK WTPEENKMFE DALALFDKET PDRLYYVASM  60
ISGKTVDDMM KQYRELLEDI ADIEAGLIPI PGYTTSSNSF TLEWINQDHE EGIFHDFNKQ  120
FYGPSGKRST SNRYSEHERK KGVPWTEEEH RQFLLGLKKY GKGDWRNISR NFVTTRTPTQ  180
VASHAQKYFI RQLSGGKDKR RSSIHDITTV NLTEMKSPSP ENHISSSSPD KSVPSPQKAL  240
CEYNFPNQEA VIGFKTYGLK LHEHGMHSVI LQGLQFGQYN TM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1528100880RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544679.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H75e-96DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G2YKR50.0A0A2G2YKR5_CAPAN; Transcription factor DIVARICATA
STRINGPGSC0003DMT4000492091e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-106MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]