PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g10180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 801aa    MW: 87353.1 Da    PI: 6.1051
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g10180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4102.2e-1254227812374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ +   +++ ++a+++f+ +sP++kfsh+taNq
  CA10g10180 422 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPMTSVPVLYTQKLASAFQVFNGISPFIKFSHFTANQ 520
                 579*****************************************************************9999*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 aI ea+e+e++vHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + +a+++ +l++e+L+v+++
  CA10g10180 521 AIQEAFEREDQVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMDALEATGKRLSDFAERLGLPFEFLP-LADKVGNLDPEKLNVSKR 614
                 *************************************************....***************************.6***************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll++ei+nv+
  CA10g10180 615 EAVAVHWLQ--HSLYDVTGSDSN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSKEIRNVL 706
                 ********9..999999999999....**********************.899********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa lll +++s+gy++ e++g+l lgWkd  L+++SaWr
  CA10g10180 707 AVGGPSRSGEVK-FNNWREKLQQSGFRCLSLAGNAAAQATLLLGMFPSHGYTLVEDNGTLKLGWKDLCLFTASAWR 781
                 ******888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.13395761IPR005202Transcription factor GRAS
PfamPF035147.8E-123422781IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MAKAFPLNGE NCTDTTGEKI VVGGSSTGEK LQATSKDINN VHRQGLLHGD SGKMVRKRAA  60
SDMEIQTGAG EDHRYLRRPV TIGGSHAQMS VSTSSFGHNI NNIPTTTNVS NYSTMQMLPS  120
STNLCGVTSR GPGIDTGFSN STPNLTYTDA ITSHHQLQGP QTQNDNQSPS VCVFSAAVVS  180
SPLTTGRIDT MEDSTSATAW IDSIIKDLIN SSAQVSVPQL IQNVREIIHP CNPYLASLLE  240
YRLRSLNTGG ADQNDPMECW RRKEPLPQLA GLQQQVQNSA NLLQHNILSL RDSSNNQYLN  300
WEIALPASHN APVAPSVNQH QQLGGNNPTA TDLSFVTPPI LSPQVQQQQQ EESPQSQQQA  360
AIDLEQQKQQ QSSCSLSPTS VADSSVKIKT TTPVPPVPVN TYKEKKEEER QQKRDEEGLH  420
LLTLLLQCAE AVSADNLEEA NKMLLEVSEL STPFGTSAQR VAAYFSEAMS ARLLNSCLGI  480
YAALPMTSVP VLYTQKLASA FQVFNGISPF IKFSHFTANQ AIQEAFERED QVHIIDLDIM  540
QGLQWPGLFH ILASRPGGPP FVRLTGLGTS MDALEATGKR LSDFAERLGL PFEFLPLADK  600
VGNLDPEKLN VSKREAVAVH WLQHSLYDVT GSDSNTLSLL QRLAPKVVTV VEQDLSHAGS  660
FLGRFVEAIH YYSALFDSLG ACYGEESEER HVVEQQLLSK EIRNVLAVGG PSRSGEVKFN  720
NWREKLQQSG FRCLSLAGNA AAQATLLLGM FPSHGYTLVE DNGTLKLGWK DLCLFTASAW  780
RPNSLHVASG SRHFSRPNMD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04057843382Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545671.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A1U8EH140.0A0A1U8EH14_CAPAN; protein SCARECROW-like
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein