PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g09180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 172aa MW: 18981.6 Da PI: 8.7451 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.3 | 1.9e-12 | 114 | 148 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg ++ p+ R+gp g+++LCnaCGl+++ k CA10g09180 114 CRHCGFSSksNPMIRHGPAGPRSLCNACGLMWANK 148 *****988889*********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 2.1E-7 | 38 | 66 | IPR010402 | CCT domain |
SMART | SM00401 | 0.0038 | 108 | 161 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.39E-8 | 113 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.8E-10 | 113 | 148 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.19E-6 | 113 | 148 | No hit | No description |
Pfam | PF00320 | 4.9E-11 | 114 | 148 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
VQAVLLLLGG YEVPTVKMAS QSHSASIGGP GRLNQPQRAG SLSHFREKRK ERCFDKKIRY 60 TVQKEVTLRQ YNFGHFIFSK SESDEAASSL AEGNVGSSQE EQETSSYLLF ANKCRHCGFS 120 SKSNPMIRHG PAGPRSLCNA CGLMWANKFI IGFEALLTLL FPFVSLDSDD W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261227 | 3e-72 | GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088797.1 | 1e-71 | GATA transcription factor 24-like | ||||
Swissprot | Q8H1G0 | 6e-43 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A0V0HSS3 | 1e-71 | A0A0V0HSS3_SOLCH; Putative GATA transcription factor 24-like | ||||
STRING | Solyc10g047640.1.1 | 5e-71 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 9e-40 | ZIM-like 1 |