PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g09000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 451aa    MW: 51638.9 Da    PI: 4.2917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g09000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-1968125255
         AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr++  +g+WvAeIr+p+   g  k+  kr +lg+f ta eAa a+++a+k ++g
  CA10g09000  68 TYRGVRQRT-WGKWVAEIREPVYfSGeyKStgKRLWLGTFSTASEAAIAYDEAAKVMYG 125
                 69****999.**********777788996679***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-2967134No hitNo description
SMARTSM003804.9E-3168139IPR001471AP2/ERF domain
PfamPF008478.3E-1268125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2868134IPR001471AP2/ERF domain
PROSITE profilePS5103222.24768133IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1968134IPR016177DNA-binding domain
PRINTSPR003671.0E-96980IPR001471AP2/ERF domain
PRINTSPR003671.0E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDSCYNRKQK RRRNGSDSIE EILLRWKFFY QDVNCIDDQV KKKRRIRVKG STKGCMRGKG  60
GPENSGCTYR GVRQRTWGKW VAEIREPVYF SGEYKSTGKR LWLGTFSTAS EAAIAYDEAA  120
KVMYGSNAIL NFPNYCDLSS KTSSLELSGK SSDDHGDLGV DKTQNIEIES GLKTSDTLDD  180
GVVVNTDLGN CANIDEISEI HQECCKGNQG SPTCCLTEEE LEVIPEENSE IEVNDECNSG  240
ICSTSQNSCV KVETPIVEEM ENDEFVHNKD LERLNFNDVL NSLLEDKTDV RPTLMFSKDV  300
LRTDEICNST DQIVRQEMDK YSYSMNISEE QPLDFRSSEN RREDFSNHIK YMERCLMEDS  360
SPMEATTISD AFCLTESYKE AYSFQRFLEE SFELNYAETE EQFDYTYDQQ INLQNSETRS  420
QIRSDGIISN QADWKEQNLD VFGLDDWSRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1966133363ATERF1
3gcc_A4e-1966133363ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512NRKQKRRR
24044KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552961.10.0PREDICTED: uncharacterized protein LOC107852448
TrEMBLA0A2G2YL040.0A0A2G2YL04_CAPAN; Dehydration-responsive element-binding protein 2A
STRINGPGSC0003DMT4000410641e-155(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-32ERF family protein