PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g08100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Whirly | ||||||||
Protein Properties | Length: 237aa MW: 26329.2 Da PI: 10.2912 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 201.1 | 1.4e-62 | 60 | 198 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 sv+k+kaal+ ++++ptf+++dsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++k+sceffhdp++++sn+G+vrk+l+++ CA10g08100 60 SVFKGKAALSAEPRLPTFNKMDSGVVKLNRRGVIMLTFWPSIGERKYDWEKRQLFALSATEVGSLISMGTKDSCEFFHDPSMQSSNAGQVRKSLSIKSN 158 79************************************************************************************************* PP Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +dG+G+fv+lsv n+ +k+n++f+vPv+ aefav+r++++ CA10g08100 159 ADGTGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 198 *************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.1E-75 | 48 | 215 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.36E-65 | 53 | 228 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.9E-59 | 61 | 195 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKFFSLHNRN QLLLNKLPVE GVKDSIWQHA INTFAGFSSV RQYGAADAGK LAGRVFAPYS 60 VFKGKAALSA EPRLPTFNKM DSGVVKLNRR GVIMLTFWPS IGERKYDWEK RQLFALSATE 120 VGSLISMGTK DSCEFFHDPS MQSSNAGQVR KSLSIKSNAD GTGYFVSLSV VNNNLKTNDR 180 FTVPVTTAEF AVMRTAFSFA LPHIMGWDRF TNRPSECISQ SPAKVVPQLT EVEWCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-115 | 46 | 216 | 2 | 172 | StWhy2 |
3n1i_A | 1e-115 | 46 | 216 | 2 | 172 | protein StWhy2 |
3n1j_A | 1e-115 | 46 | 216 | 2 | 172 | Protein StWhy2 |
3n1k_A | 1e-115 | 46 | 216 | 2 | 172 | protein StWhy2 |
3n1l_A | 1e-115 | 46 | 216 | 2 | 172 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM234504 | 0.0 | HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545756.1 | 1e-172 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1 | ||||
Swissprot | D9J034 | 1e-150 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A1U8EH92 | 1e-171 | A0A1U8EH92_CAPAN; Single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
TrEMBL | A0A2G2YKX8 | 1e-171 | A0A2G2YKX8_CAPAN; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1 | ||||
TrEMBL | A0A2G3BE26 | 1e-171 | A0A2G3BE26_CAPCH; Single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
STRING | Solyc11g044750.1.1 | 1e-148 | (Solanum lycopersicum) | ||||
STRING | XP_009772771.1 | 1e-148 | (Nicotiana sylvestris) | ||||
STRING | XP_009598355.1 | 1e-147 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 8e-95 | WHIRLY 2 |