PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g08070

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 264aa MW: 29897.8 Da PI: 7.945

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g08070	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.9e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d+++ +G g+W++ ++ g+ R++k+ ++rw +yl CA10g08070 14 KGAWTKEEDERLIDYIRAHGEGCWRALPKAAGLLRCGKSFRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	57.1	4.2e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k +w+++ CA10g08070 67 RGNFTEEEDELIIRLHSLLGNK-WSLIAGRLP-GRTDNEIKKYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.103	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.3E-27	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.14E-8	16	61	No hit	No description
PROSITE profile	PS51294	28.783	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.35E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0090379	Biological Process	secondary cell wall biogenesis involved in seed trichome differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIDYIR AHGEGCWRAL PKAAGLLRCG KSFRLRWINY 60 LRPDLKRGNF TEEEDELIIR LHSLLGNKWS LIAGRLPGRT DNEIKKYWNT HIRRKLLSRG 120 IDPTIHLSIN EPTPKVTTIT FAAAADSTDD HHRDQKINIK AEFDETSNED NNEVPKMSCL 180 PDLNLELRIS PPHHQQLDHH HQRSNSLCFT CGLGIQNSKD CSCNNTNGIG CSNNIVSVNI 240 VTGYDFLGLK TNGLLDYRTL ETK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-27	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X95296	0.0	X95296.1 L.esculentum mRNA for THM27 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233975.1	1e-158	transcription factor
Swissprot	P81393	1e-111	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2G2YKW8	0.0	A0A2G2YKW8_CAPAN; Myb-related protein Hv1
STRING	Solyc10g055410.1.1	1e-158	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-104	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]