PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g05760
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 277aa    MW: 31372 Da    PI: 6.6606
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g05760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-162265146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++ eE+e +++++  lG++ W++Ia +++ gRt++++k++w++
       CA10g05760 22 RGKFSFEEEETIIHLHSILGNK-WSAIAGRLP-GRTDNEIKNYWNT 65
                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.426116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-10228IPR009057Homeodomain-like
SuperFamilySSF466898.13E-21375IPR009057Homeodomain-like
PROSITE profilePS5129424.531771IPR017930Myb domain
SMARTSM007171.3E-142169IPR001005SANT/Myb domain
PfamPF002491.4E-142265IPR001005SANT/Myb domain
CDDcd001674.17E-112465No hitNo description
Gene3DG3DSA:1.10.10.606.0E-212968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
LQRCGKSCRL RWTNYLRPDI KRGKFSFEEE ETIIHLHSIL GNKWSAIAGR LPGRTDNEIK  60
NYWNTRIRKK LMRMGIDPVT HSPRLDLLDL NSIFNPSIYN SCQVINNNLS RLLGVQSLVN  120
PELLKLANSL LSSNHQNQNF LLGSNFQENQ LFNSHVQNQL TSLCQANQIQ NPIQNTSTCS  180
DLNIPSVPFY SDTQVMQQPN VEQLSSNVST FSSQNSQQNE WKNFTFDSAL PNLSTPSSSP  240
TSLNSNSSTT SEEERESYCS MLNFDIPNIL DVNELL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1937140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-138HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544642.10.0PREDICTED: transcription factor WER-like
SwissprotQ9LDR88e-75MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2G2YK120.0A0A2G2YK12_CAPAN; Transcription factor MYB39
STRINGSolyc10g005460.2.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-62MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]