PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g05080
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 555aa    MW: 61916.5 Da    PI: 8.244
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g05080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.5e-093563882254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 ++yp+ +++  LAk++gL+ +qV++WF N R +
  CA10g05080 356 HPYPTDSDKVMLAKRTGLSRNQVSNWFINARVR 388
                 89*****************************88 PP
2BELL86.72.6e-28210279372
        BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+++ k+ L+s+l+eV+krYkqy++qlq v++sFe v glg+a+p+++   ka+S+hFrcLk ai++q+
  CA10g05080 210 SEHRRNKSNLVSMLDEVYKRYKQYYQQLQGVVASFESVPGLGNAAPFANQSIKALSKHFRCLKKAISDQM 279
                 68999**************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-33152277IPR006563POX domain
PfamPF075261.1E-30157276IPR006563POX domain
PROSITE profilePS5007111.92329392IPR001356Homeobox domain
CDDcd000862.29E-11332393No hitNo description
SMARTSM003895.3E-10332396IPR001356Homeobox domain
SuperFamilySSF466891.07E-16334399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-27335396IPR009057Homeodomain-like
PfamPF059201.6E-18349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MAAEGFEAYH VPQQSRRDRL RGGVSDCTVF PSFYNDQSLL NPSDLLLLSH NKQKSLHFMD  60
PQISSSFQEI NNTPAFLYNT QQSTFDPNIT TTHNNNNNNN SSNNYVSTGQ GLSLSLSYQP  120
HHQNQLIRTT AAYCNNELSS KSNSSTILGP FTGYASILKG SRFLKPAEQL MEQICDVGNN  180
NKGTYVEKFV EVDDVVVMDL SPDASDDDGS EHRRNKSNLV SMLDEVYKRY KQYYQQLQGV  240
VASFESVPGL GNAAPFANQS IKALSKHFRC LKKAISDQMN YTIKSHSHSS QINCDDSTST  300
KLVGKDKLNY NNFQRAIAIH NAGFVEHHQP VWRPQRGLPE RAVTVLRAWL FDHFLHPYPT  360
DSDKVMLAKR TGLSRNQVSN WFINARVRLW KPMVEEIHML ETRQAHKSAS QRGQNNNNTV  420
EVNFPTSNNS LPSDQNPSTS SAQQFQQVPS KRTRNNDPTD HMNLSYDNFS PRSRVGIDQV  480
SVSSGGNGGV SLTLGLHHQN NNGTGIGGLS TDPFPRNAAR RFGIDASNEG FMFGGGFEAP  540
NRQFEGQLLH DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15338396563Homeobox protein Meis2
3k2a_B3e-15338396563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546026.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A2G2YLE10.0A0A2G2YLE1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000492350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.18e-86TALE family protein