PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g04850

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 769aa MW: 86774.8 Da PI: 6.5228

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g04850	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.3	3.1e-114	394	766	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla +f+ +L+arla+++s++ykal ++ts ++ l+a++l+ +P+ k+s +t N CA10g04850 394 LRTLLINCAQAVAADDCRSATELLKQIRRHSSPFGDGNQRLAYCFADGLEARLAGTGSQIYKALINKKTS---AADFLKAFHLYLASCPFRKISGFTSN 489 6789**********************************************************999998...8********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I + +++rvHiiDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfe+++ +ak++e+++le+L++ CA10g04850 490 KTIITKARNASRVHIIDFGILYGFQWPTLIQRIAAREGGPPRLRITGIEFPQPGfrPAERIEETGRRLSDYAKSFNVPFEYQA-IAKKWETIRLEDLKL 587 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E l+Vn+ ++ ++l+de+v es r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+lea++pre er+ +Ere++gre+ CA10g04850 588 EKDEFLVVNCLYRFKNLHDETVLAESSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDMLEANVPREFPERMLIEREIFGREAL 686 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg er+er et+++W+ rl +a F+++p++++ +++ a +r+ + + + +++++++++lgWk+r+++++S+W+ CA10g04850 687 NVIACEGWERVERPETYKQWQVRLLRARFTQIPFDQQgIMNMAIEKVRTSYHKDFVIDQDNKWMLLGWKGRTIYALSCWT 766 ******************************98835666677888888888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.567	368	745	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-111	394	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence Send to blast
MDPRFNRFPS SVNGFNLENQ SLLDFSGNWK NKEPIIGAIY PDQILANGPR FENSFVQHNV 60 GGVQSFSNAP SPTSNIALTS KIGIEDDYNE DFDFSDTVLS YINQMLMEED MEDKTHMLQE 120 SLELQAKERS FYEALGKKYP PSPQQNLSIT DQNGEILDDY CSGSLYSCTS NVGSSGGYLI 180 DPRVDSIPND HNSSYEQGIS ICNGTYSSIS SSNSINNLVD GFLDSPVGPL HIPDIYNDSH 240 PIWNFRKGVE EATKFLPTNN KLLDNVIIND LLPQEKRGES GCAATQVEKR DGGGTSLTGP 300 RGRKNAHRDD KDLEEERSSK QAAVYTESTV RSEEFDVVLL HSMGDGREAL TAYRESLKNA 360 RTKTTAQNGQ SKGFTVGKGG RGKKQSAKKE VIDLRTLLIN CAQAVAADDC RSATELLKQI 420 RRHSSPFGDG NQRLAYCFAD GLEARLAGTG SQIYKALINK KTSAADFLKA FHLYLASCPF 480 RKISGFTSNK TIITKARNAS RVHIIDFGIL YGFQWPTLIQ RIAAREGGPP RLRITGIEFP 540 QPGFRPAERI EETGRRLSDY AKSFNVPFEY QAIAKKWETI RLEDLKLEKD EFLVVNCLYR 600 FKNLHDETVL AESSRTLVLN LIREINPDIF IHGIVNGAYS APFFVTRFRE VLFHFSALFD 660 MLEANVPREF PERMLIEREI FGREALNVIA CEGWERVERP ETYKQWQVRL LRARFTQIPF 720 DQQGIMNMAI EKVRTSYHKD FVIDQDNKWM LLGWKGRTIY ALSCWTPI*

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence Send to blast

MDPRFNRFPS SVNGFNLENQ SLLDFSGNWK NKEPIIGAIY PDQILANGPR FENSFVQHNV  60
GGVQSFSNAP SPTSNIALTS KIGIEDDYNE DFDFSDTVLS YINQMLMEED MEDKTHMLQE  120
SLELQAKERS FYEALGKKYP PSPQQNLSIT DQNGEILDDY CSGSLYSCTS NVGSSGGYLI  180
DPRVDSIPND HNSSYEQGIS ICNGTYSSIS SSNSINNLVD GFLDSPVGPL HIPDIYNDSH  240
PIWNFRKGVE EATKFLPTNN KLLDNVIIND LLPQEKRGES GCAATQVEKR DGGGTSLTGP  300
RGRKNAHRDD KDLEEERSSK QAAVYTESTV RSEEFDVVLL HSMGDGREAL TAYRESLKNA  360
RTKTTAQNGQ SKGFTVGKGG RGKKQSAKKE VIDLRTLLIN CAQAVAADDC RSATELLKQI  420
RRHSSPFGDG NQRLAYCFAD GLEARLAGTG SQIYKALINK KTSAADFLKA FHLYLASCPF  480
RKISGFTSNK TIITKARNAS RVHIIDFGIL YGFQWPTLIQ RIAAREGGPP RLRITGIEFP  540
QPGFRPAERI EETGRRLSDY AKSFNVPFEY QAIAKKWETI RLEDLKLEKD EFLVVNCLYR  600
FKNLHDETVL AESSRTLVLN LIREINPDIF IHGIVNGAYS APFFVTRFRE VLFHFSALFD  660
MLEANVPREF PERMLIEREI FGREALNVIA CEGWERVERP ETYKQWQVRL LRARFTQIPF  720
DQQGIMNMAI EKVRTSYHKD FVIDQDNKWM LLGWKGRTIY ALSCWTPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-50	383	767	7	379	Protein SCARECROW
5b3h_D	4e-50	383	767	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553556.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2G2YL99	0.0	A0A2G2YL99_CAPAN; Scarecrow-like protein 9
STRING	Solyc10g086530.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein