PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g04740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 133aa MW: 15114.2 Da PI: 10.3479 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.2 | 2.1e-29 | 61 | 110 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +rlrWtp+LH+rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ CA10g04740 61 ARLRWTPDLHRRFVHAVERLGGHDRATPKLVLRLMDIKGLNIAHVKSHLQ 110 79************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 57 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.333 | 57 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-13 | 60 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-20 | 61 | 111 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-7 | 62 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MEDSGGTEFS KTSPNSDKYV DEDENTWIKL QKDGGSSSNS TVEESREKKI SVRSYVRSKM 60 ARLRWTPDLH RRFVHAVERL GGHDRATPKL VLRLMDIKGL NIAHVKSHLQ VNLSLATTKT 120 KYLKYFVIHI NS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-18 | 61 | 110 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 61 | 110 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 61 | 110 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 61 | 110 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 61 | 110 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240197 | 2e-70 | AC240197.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence. | |||
GenBank | HG975522 | 2e-70 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552953.1 | 1e-75 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2G2VSP1 | 1e-82 | A0A2G2VSP1_CAPBA; Putative Myb family transcription factor | ||||
STRING | PGSC0003DMT400041071 | 3e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4382 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-34 | G2-like family protein |