PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g03740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 157aa MW: 17892.7 Da PI: 10.6567 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 28.2 | 6.2e-09 | 102 | 127 | 1 | 26 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsa 26 a+g+kdrhsk++T+ g++dRRvRl CA10g03740 102 ATGRKDRHSKVSTASGPKDRRVRLXX 127 589********************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-7 | 103 | 126 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MNRQLQVSNE KEHKSSSQEE EEKKDESFQE NAQEILQSDY QNQHLQQLPN YFTSSSATLV 60 QKHQSNTQCP SHEEVKKVLL KRKPKRAKQD VMEVHGSRIV RATGRKDRHS KVSTASGPKD 120 RRVRLXXLGS RLTRQFSSTT CKIVLAMTVL VRPSIG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443396.1 | 1e-37 | PREDICTED: transcription factor TCP3-like | ||||
TrEMBL | A0A2G2VS03 | 8e-70 | A0A2G2VS03_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G2YJC2 | 4e-71 | A0A2G2YJC2_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068478 | 5e-52 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15569 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 3e-09 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |