PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g02900 | ||||||||
Common Name | GLK2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 34824.9 Da PI: 9.481 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84 | 1.6e-26 | 95 | 149 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+ave+L G +kA+P+++lelm +gLt+++++SHLQkYR + CA10g02900 95 KVKVDWTPELHRRFVKAVEKL-GVDKAVPSRLLELMATDGLTRHNIASHLQKYRAH 149 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.736 | 92 | 151 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 93 | 151 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-17 | 94 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 95 | 149 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 98 | 147 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MMLVVSTPLS YKNERGNYDL FQDFPDGNLI DTIDFDDFFE GINDGDLLQN LKILDEFDIS 60 KNNTTTNLNV KTKSKENDKS KKSSSQIKNP EGKKKVKVDW TPELHRRFVK AVEKLGVDKA 120 VPSRLLELMA TDGLTRHNIA SHLQKYRAHR KHLLAREAEA ASWTQRKQMY DGAIAIGGGG 180 KRVIMNPWSA PPTMGFPPMA HHIRPLHVWG HPYVNNSFWH PHYQGVPNSL APGTPCFPSP 240 TRFAAALMVP GVPPPFASGQ TPHLHPTKES IDAAIEDVLS KPQTPLPIGL KPPSIDSVLN 300 ELQCQGITKI PPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-15 | 92 | 148 | 2 | 58 | ARR10-B |
5lxu_A | 6e-15 | 100 | 151 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ420379 | 0.0 | KJ420379.1 Capsicum annuum isolate Maor golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420380 | 0.0 | KJ420380.1 Capsicum annuum isolate 1154 golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420381 | 0.0 | KJ420381.1 Capsicum annuum var. glabriusculum isolate Cora14 golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420382 | 0.0 | KJ420382.1 Capsicum annuum isolate 1901 golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420383 | 0.0 | KJ420383.1 Capsicum annuum isolate PI586677 golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420384 | 0.0 | KJ420384.1 Capsicum annuum isolate Grif9094 golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420385 | 0.0 | KJ420385.1 Capsicum annuum var. glabriusculum isolate Nayoi3 golden2-like transcription factor (GLK2) mRNA, complete cds. | |||
GenBank | KJ420386 | 0.0 | KJ420386.1 Capsicum annuum var. glabriusculum isolate 1202 golden2-like transcription factor (GLK2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545288.1 | 0.0 | PREDICTED: transcription activator GLK1-like isoform X1 | ||||
Swissprot | Q9SIV3 | 1e-62 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1U8EDI6 | 0.0 | A0A1U8EDI6_CAPAN; transcription activator GLK1-like isoform X1 | ||||
STRING | PGSC0003DMT400056255 | 1e-158 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-62 | GBF's pro-rich region-interacting factor 1 |