PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g01490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 21119.9 Da PI: 8.1871 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 21 | 74 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++t+eq+++Le F +++++ e++ +LAk+lg++ rq+ +W+qNrRa++k+ CA10g01490 21 KKRLTQEQVKRLEISFDSTKKLEPEQKLQLAKELGVPPRQIAIWYQNRRARWKN 74 5679************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 105.7 | 3.5e-34 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqvk LE sF++++kLepe+K +la+eLg+ prq+a+W+qnrRAR+k++ lE dy+aL+ ++d+ +e++++eke+e L+ elk+ CA10g01490 20 NKKRLTQEQVKRLEISFDSTKKLEPEQKLQLAKELGVPPRQIAIWYQNRRARWKNQSLELDYNALQLKLDTTLAEKKQIEKENELLKVELKK 111 79*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.548 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 18 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-13 | 21 | 76 | No hit | No description |
Pfam | PF00046 | 1.0E-15 | 21 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-20 | 21 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-17 | 21 | 84 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNNFLNSQYL HKHQSILNHN KKRLTQEQVK RLEISFDSTK KLEPEQKLQL AKELGVPPRQ 60 IAIWYQNRRA RWKNQSLELD YNALQLKLDT TLAEKKQIEK ENELLKVELK KVNEMLIAIK 120 QAQIQNELTQ GSSSFQEDVS CSWVNINNNN INNNNYNGSE SNLPLDEFYA CMKDMYDVY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254710 | 2e-70 | AC254710.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-57k18 map 10, complete sequence. | |||
GenBank | HG975449 | 2e-70 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544740.1 | 1e-126 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
TrEMBL | A0A2G2YIM8 | 1e-127 | A0A2G2YIM8_CAPAN; Homeobox-leucine zipper protein HOX6 | ||||
STRING | PGSC0003DMT400054818 | 1e-87 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-25 | HD-ZIP family protein |