PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g01320

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 192aa MW: 21703 Da PI: 11.6533

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g01320	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.5	4.6e-20	31	80	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aaka+++a++ l+g CA10g01320 31 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAAKAYDNAARTLRG 80 79*****.******883....5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-12	31	80	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.7E-32	31	89	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-37	31	94	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.721	31	88	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-22	31	90	IPR016177	DNA-binding domain
CDD	cd00018	5.30E-29	31	90	No hit	No description
PRINTS	PR00367	3.7E-10	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-10	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGRGRATPAA PXTPAVAAKV NGSAGVLKEI KFRGVRKRPW GRFAAEIRDP WKKTRVWLGT 60 FDSAEDAAKA YDNAARTLRG PKAKTNFPLS PYYNQHQQNH HHQYDMLINP NPRMYHQENP 120 IVCQRPTSSG MSSTVESFSG PRPRPPXNIL DRLLWSWMIV GVIVIRRLLL LMLMVVVKVI 180 MVIVAILFRR L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-20	32	89	3	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-20	32	89	6	64	ATERF1
3gcc_A	2e-20	32	89	6	64	ATERF1
5wx9_A	1e-19	21	88	3	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00194	DAP	Transfer from AT1G50640	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT779514	9e-70	KT779514.1 UNVERIFIED: Capsicum annuum ethylene response factor-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016545297.1	6e-73	PREDICTED: ethylene-responsive transcription factor 3-like
Swissprot	O80339	2e-43	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	A0A2G2YII7	1e-137	A0A2G2YII7_CAPAN; Ethylene-responsive transcription factor 3
STRING	PGSC0003DMT400037359	3e-64	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3330	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50640.1	1e-32	ethylene responsive element binding factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]