PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g00800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25920.1 Da PI: 8.8645 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++G g+W++ ++ g+ R++k+c++rw +yl CA10g00800 16 KGPWTPEEDLKLISFIQKHGHGNWRALPKQAGLVRCGKSCRLRWINYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2.1e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++++ +G++ W++Ia++++ gRt++++k+ w+++l CA10g00800 69 RGNFTSQEEDTIINLHRSFGNR-WSKIASHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.615 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-31 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.376 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGKGRRSCCD KSKVKKGPWT PEEDLKLISF IQKHGHGNWR ALPKQAGLVR CGKSCRLRWI 60 NYLRPDVKRG NFTSQEEDTI INLHRSFGNR WSKIASHLPG RTDNEIKNVW NTHLKKRLLL 120 MKKEEHNSPS STPTCSSTTL GSCSPTSSKA NDQVIDFWEY MLDTSNPTSI NNLDHFDSYS 180 KQDTTSTNTE HHQPQMADEY ECQKWLTYLE IELGLTTNEA QHQIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545358.1 | 1e-170 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SA47 | 3e-78 | MYB58_ARATH; Transcription factor MYB58 | ||||
TrEMBL | A0A1U8EDQ7 | 1e-168 | A0A1U8EDQ7_CAPAN; Transcription factor MYB32 | ||||
TrEMBL | A0A2G2YIH0 | 1e-168 | A0A2G2YIH0_CAPAN; myb-related protein Myb4-like | ||||
STRING | PGSC0003DMT400029235 | 1e-129 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 7e-70 | myb domain protein 58 |
Publications ? help Back to Top | |||
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