PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g00460
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 293aa    MW: 34085.2 Da    PI: 6.5964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g00460genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.61.8e-301895179
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
                lppGfrFhPtdeelvv+yLkkkv++ ++++ ++i+evd+yk++Pw+Lp+k+  +e+ewyfFs+rd+ky++g r+nra++
  CA10g00460 18 LPPGFRFHPTDEELVVHYLKKKVATAPIPV-DIIAEVDLYKFDPWELPAKAIFGEQEWYFFSPRDRKYPNGARPNRAAT 95
                79****************************.99***************7777899*********************643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-3513176IPR003441NAC domain
PROSITE profilePS5100533.51418176IPR003441NAC domain
PfamPF023651.1E-1319102IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESTDSSTAT RHQQPHQLPP GFRFHPTDEE LVVHYLKKKV ATAPIPVDII AEVDLYKFDP  60
WELPAKAIFG EQEWYFFSPR DRKYPNGARP NRAATSDLYY PGLIKTIFLA TLMLTWHICG  120
TLRYHYRKKW KFLMDGNVLC HISFSMDFQR CFDGLICRKS CLYLLDDWVL CRIYKKNNRQ  180
RPIDIHERDD MNDIMVPPLF FQQKTQEIKP SNYGTLLENE SNNMYDGIIN NTSNMIINNN  240
EQLSSKLYWN NVDETTTTTT TTTTTDANNG DDGLNNMNNA RITQHDQSXS QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-401817817167NO APICAL MERISTEM PROTEIN
1ut4_B5e-401817817167NO APICAL MERISTEM PROTEIN
1ut7_A5e-401817817167NO APICAL MERISTEM PROTEIN
1ut7_B5e-401817817167NO APICAL MERISTEM PROTEIN
4dul_A5e-401817817167NAC domain-containing protein 19
4dul_B5e-401817817167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545017.11e-149PREDICTED: NAC transcription factor 56 isoform X1
SwissprotA0SPJ92e-55NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A2G2XZI70.0A0A2G2XZI7_CAPAN; NAC transcription factor 25
STRINGPGSC0003DMT4000644283e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-55NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]