PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g18600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 20571.4 Da PI: 9.2371 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.3 | 3.5e-28 | 16 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lp Gf+F Ptdeel yLk k g k++ +++++diyk+eP++L+ + k+ ++++y F+ +++k+ tg+r +r+t +g+Wka+ k++ ++ CA09g18600 16 LPIGFHFIPTDEELN-MYLKLKSCGGKIPH-GIFTDLDIYKHEPHELRgLAEKHWDDRMYLFTLSRRKNDTGTRLERKTPKGVWKASQARKNLSNNekf 112 699**********97.9**********999.89**************933333445578******************************9999997777 PP NAM 96 ..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g+k++Lv++ ++k++kt+W+m eyr+ CA09g18600 113 gnirnkdvtgDDVQIGTKTSLVYW---ESKTTKTSWLMSEYRF 152 77766666555555**********...566689********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-29 | 15 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.23 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 17 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDSSNYEYDP EWKKKLPIGF HFIPTDEELN MYLKLKSCGG KIPHGIFTDL DIYKHEPHEL 60 RGLAEKHWDD RMYLFTLSRR KNDTGTRLER KTPKGVWKAS QARKNLSNNE KFGNIRNKDV 120 TGDDVQIGTK TSLVYWESKT TKTSWLMSEY RFPDELHHQP VSNEVPKLLI IMLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-16 | 7 | 152 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540566.1 | 1e-119 | PREDICTED: NAC domain-containing protein 2-like | ||||
TrEMBL | A0A1U8E2C1 | 1e-118 | A0A1U8E2C1_CAPAN; NAC domain-containing protein 2-like | ||||
STRING | PGSC0003DMT400087080 | 5e-53 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15567 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-20 | NAC family protein |