PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g16760
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 269aa    MW: 30468.7 Da    PI: 6.1229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g16760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++  ++ G+g +W + +++ g++R++k+c++rw++yl
       CA09g16760 14 RGPWSPEEDNILKNFLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding46.49.1e-1569111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd +++++ +q G++ W+ Ia+ ++ gRt++++k++w++
       CA09g16760  69 GGFTEEEDNIILNLYNQIGSR-WSVIAANLQ-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.224962IPR017930Myb domain
SuperFamilySSF466895.59E-2712109IPR009057Homeodomain-like
SMARTSM007174.1E-111364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221569IPR009057Homeodomain-like
CDDcd001673.13E-81662No hitNo description
PROSITE profilePS5129421.86163117IPR017930Myb domain
SMARTSM007172.4E-1367115IPR001005SANT/Myb domain
PfamPF002493.1E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2470117IPR009057Homeodomain-like
CDDcd001671.74E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDNILKNFLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIL NLYNQIGSRW SVIAANLQGR TDNDVKNYWN TKLKKKLLAS  120
QNSNIISTNN NINSSDFNHI NYSRNYYGTL DYSNTFTSHM DPNLTNYSNN CDQYPLLPSL  180
VEIQENDATI QSSESCQILQ KCATLKGSDT HLSTFLQNPN NIGYNYYDDI LENGFDFQEN  240
AIGGANPNSS YYNNILGIDD QLFKGFEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-52HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755243e-52HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541166.10.0PREDICTED: transcription factor MYB36-like
TrEMBLA0A2G2YUZ80.0A0A2G2YUZ8_CAPAN; Myb-related protein Myb4
STRINGPGSC0003DMT4000009321e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.15e-73MYB family protein