PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g16580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 258aa MW: 27776.9 Da PI: 10.6001 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.4e-19 | 66 | 99 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + CA09g16580 66 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 99 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.7E-17 | 60 | 112 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-12 | 63 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.6E-16 | 64 | 99 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.532 | 64 | 96 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.10E-12 | 65 | 97 | No hit | No description |
Pfam | PF00320 | 4.8E-17 | 66 | 99 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 66 | 91 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
VDNFGSRSSG SHDQLEKKNK GLKLTLWKNK GVQKLKNNNL DYTNSKLKLE DQNDYNNNNI 60 IPIRVCSDCN TTKTPLWRSG PKGPKSLCNA CGIRQRKARR AAAAAATATN GTNVNSTETS 120 STTTTITTTT KVKVQQQKNK TTKVNTNHVV PFKKRCKFLS TTTTAPAPAA TAXTAPAPAA 180 ATVTATAHCT LVGSSSSSSS YNNNNNNNNN TNQKQKLCFE DFFVNLSNNL AIHRVFPQDE 240 KEAAILLMAL SSGLVHG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 5e-38 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540407.1 | 1e-123 | PREDICTED: GATA transcription factor 21-like | ||||
TrEMBL | A0A2G2YUT6 | 0.0 | A0A2G2YUT6_CAPAN; GATA transcription factor 16 | ||||
STRING | Solyc12g008830.1.1 | 1e-91 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 3e-21 | GATA family protein |