PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g13460
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 574aa    MW: 64362.7 Da    PI: 5.8404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g13460genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.21.4e-1272035721373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+++++l   + l+a+++  +s +gdp+qRl ay++e+L ar   s++++y++l+++e +    ++ ++++ +++e++P+lkf++++aN
  CA09g13460 203 LKQLLITCARALAENKLDDFEILVAKVRSFVSVTGDPIQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GKDLFSYMYILYEICPYLKFGYMAAN 298
                 689***************************************************9**************9...99999999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI+ea  +eer+HiiDf+i qG+QW+++lqaLa+Rp+g+p +RiTg+++p s+  + + l ++++rL+ + e++++ +ef++ v     +++ ++L+v
  CA09g13460 299 GAIVEACRNEERIHIIDFQIAQGTQWMTILQALAARPGGAPYVRITGIDDPLSQyaRGDGLAAVAKRLSAISEKFNIAVEFHA-VPVFALEVTRDMLDV 396
                 **************************************************9998999**************************.566677889****** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn++lqlh+++desv+++++rd++++++ksl Pk+v++veqe+++n+++Fl rf+eal+yy a+f+s++a+lpr+s+eri+vE+++l+r+iv
  CA09g13460 397 RPGEALAVNFHLQLHHTPDESVDVNNPRDDLIRMIKSLCPKIVTLVEQESNTNTAPFLPRFVEALDYYHAMFESIDATLPRDSKERINVEQHCLARDIV 495
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nvvaceg+er+erhe l+kW++r+++aGF+++pls ++ + +k l+++++ + y + e++g+++lgWk+r+Lvs+SaW
  CA09g13460 496 NVVACEGKERVERHELLGKWKSRFMMAGFQQYPLSAYVSSVIKDLMNRYS-EHYALVEKDGAMLLGWKERNLVSASAW 572
                 **************************************************.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.155177554IPR005202Transcription factor GRAS
PfamPF035144.9E-125203572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDSGDYYGYG VTDRDLSYSS YPTVSSLETR PFGTSKFDSG NSPLANYFES HTFNTVTDYQ  60
EQHSFIENLS GASSSSDSSL DYNQYFHRPR PSEDCLPEGL QVFSSGTSAL HNVDHSRNMK  120
HTHLQLESAL VGPHEDAMKS NPYLGKNRGA QTSSLRSRAW NKEAQVLDRT QQSLVSILNG  180
IQSDTQDKVM EDLILLDVPS SNLKQLLITC ARALAENKLD DFEILVAKVR SFVSVTGDPI  240
QRLGAYIVEG LVARKELSGT TIYRSLRCKE PAGKDLFSYM YILYEICPYL KFGYMAANGA  300
IVEACRNEER IHIIDFQIAQ GTQWMTILQA LAARPGGAPY VRITGIDDPL SQYARGDGLA  360
AVAKRLSAIS EKFNIAVEFH AVPVFALEVT RDMLDVRPGE ALAVNFHLQL HHTPDESVDV  420
NNPRDDLIRM IKSLCPKIVT LVEQESNTNT APFLPRFVEA LDYYHAMFES IDATLPRDSK  480
ERINVEQHCL ARDIVNVVAC EGKERVERHE LLGKWKSRFM MAGFQQYPLS AYVSSVIKDL  540
MNRYSEHYAL VEKDGAMLLG WKERNLVSAS AWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-632005721374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612450.0GQ261245.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI039 mRNA, complete cds.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541624.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016541625.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8ECN60.0A0A1U8ECN6_CAPAN; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2G2YTG00.0A0A2G2YTG0_CAPAN; scarecrow-like protein 21
STRINGPGSC0003DMT4000561200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-172GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]