PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g12970

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 351aa MW: 39684.9 Da PI: 9.446

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g12970	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.5e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g++ CA09g12970 14 LPPGFRFYPTDEELLVQYLCKKVAGHNFPL-QIIGEIDLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITS-QGRK 110 79**************************.89***********8777899**********************************9.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkg+kt+W+mheyrl CA09g12970 111 VGIKKALVFYVGKAPKGSKTNWIMHEYRL 139 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-67	10	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.341	14	162	IPR003441	NAC domain
Pfam	PF02365	3.9E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHN FPLQIIGEID LYKFDPWVLP 60 SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSQGRK VGIKKALVFY 120 VGKAPKGSKT NWIMHEYRLF ETSRKNGSSK LDEWVLCRIY KKNSSGPKPL MPGLRSNEYS 180 HAASSTTSSS SQFDDMLESL PEMDDRFSNL PRLSYLKTEK LNLERLDSAN FDWAILAGLK 240 PMPELGPSNQ APGVHAQAQA QVNNFIQNNN NMNFLNDVNA PPTNIRSNTK VESINLDEEV 300 ESGIRNQRFD KSGYFQQNMN GLSQLYTNNV NVGQFGIQCP NQTLNLGFRQ *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHN FPLQIIGEID LYKFDPWVLP  60
SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSQGRK VGIKKALVFY  120
VGKAPKGSKT NWIMHEYRLF ETSRKNGSSK LDEWVLCRIY KKNSSGPKPL MPGLRSNEYS  180
HAASSTTSSS SQFDDMLESL PEMDDRFSNL PRLSYLKTEK LNLERLDSAN FDWAILAGLK  240
PMPELGPSNQ APGVHAQAQA QVNNFIQNNN NMNFLNDVNA PPTNIRSNTK VESINLDEEV  300
ESGIRNQRFD KSGYFQQNMN GLSQLYTNNV NVGQFGIQCP NQTLNLGFRQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-106	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-106	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-106	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-106	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-106	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-106	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-106	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-106	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-106	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-106	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-106	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-106	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-106	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-106	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269\|PubMed:25005917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269\|PubMed:25005917}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541783.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	Q9SQL0	0.0	JA2_SOLLC; NAC domain-containing protein JA2
TrEMBL	A0A2G2YTA7	0.0	A0A2G2YTA7_CAPAN; NAC domain-containing protein 55
STRING	Solyc12g013620.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-126	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]