PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g12540

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 375aa MW: 40566.5 Da PI: 8.0023

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g12540	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.4	5.4e-34	30	170	3	123
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaess 78 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ + c e+ CA09g12540 30 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELppwkptigpttnntldqekdlgiQ------C--EEA 120 89*************************************************************998887776555543332222220......2..222 PP TCP 79 sssasnsssg......................kaaksaakskksqksaasalnlakesrakararar 123 + + ++s+++ +++n a +s ++a+a a CA09g12540 121 ---------QfvgdnnddnvvgpsskramimlR--------NESDTRVLHQNNSASSSGENANASAS 170 .........122222222355553322333331........22222222222222233333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.2E-28	30	169	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.855	31	89	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGTSSRFGSR NSGGGEIVEV QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY 60 DVQDRLGYDR PSKAVDWLIK KAKASIDELA ELPPWKPTIG PTTNNTLDQE KDLGIQCEEA 120 QFVGDNNDDN VVGPSSKRAM IMLRNESDTR VLHQNNSASS SGENANASAS ASANASFLLP 180 SLDSDAISDT IKSFFPMGGG STDGNSSAMQ FQTFQEHNLL SRTSSQSQEL KLSLQSFQDP 240 ILLDFQNLQS QHHNRHTEQA QTQFQASNFF TGSTPLIGFG ASGWPEHQHL PVELGRMQRL 300 AAARAGGNNS TGIALGGGAV TGAGGYLFNS PXXXXXXLTH HLPRHCYSSC SAKISFCFRG 360 DPFSPVTHLR FVHG*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGTSSRFGSR NSGGGEIVEV QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY  60
DVQDRLGYDR PSKAVDWLIK KAKASIDELA ELPPWKPTIG PTTNNTLDQE KDLGIQCEEA  120
QFVGDNNDDN VVGPSSKRAM IMLRNESDTR VLHQNNSASS SGENANASAS ASANASFLLP  180
SLDSDAISDT IKSFFPMGGG STDGNSSAMQ FQTFQEHNLL SRTSSQSQEL KLSLQSFQDP  240
ILLDFQNLQS QHHNRHTEQA QTQFQASNFF TGSTPLIGFG ASGWPEHQHL PVELGRMQRL  300
AAARAGGNNS TGIALGGGAV TGAGGYLFNS PXXXXXXLTH HLPRHCYSSC SAKISFCFRG  360
DPFSPVTHLR FVHG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-20	36	89	1	54	Putative transcription factor PCF6
5zkt_B	1e-20	36	89	1	54	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	5e-33	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541752.1	0.0	PREDICTED: transcription factor TCP4-like
TrEMBL	A0A2G2YTJ7	0.0	A0A2G2YTJ7_CAPAN; Transcription factor PCF5
STRING	XP_009785152.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3207	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	2e-49	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3