PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g12290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 36617.9 Da PI: 8.0195 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.9e-31 | 62 | 115 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtp+LH rFv+a+e+LGG+++AtPk il++m+ +gL+++hvkSHLQ+YR+ CA09g12290 62 ARLRWTPDLHLRFVHAMERLGGQDRATPKLILQMMNTNGLSIAHVKSHLQMYRS 115 69***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-29 | 58 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.213 | 58 | 118 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-14 | 61 | 116 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 62 | 117 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-9 | 63 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MLEDSDETGC NSKTSSNFKK NEDETEENGS SKFKDRGSSS DSTLEESEKK PYVRPYVRSK 60 MARLRWTPDL HLRFVHAMER LGGQDRATPK LILQMMNTNG LSIAHVKSHL QMYRSKKMDG 120 QSQGIGHHHK LFMEGGDPNI FNLIRFPMFP AYYQRLNSTF RYGDASWNCH GNWMPTMGQT 180 TLTGTGRGLY TTLNHLCTRI PSFPEIKDVL GSSRGNPSDD LNRLFNIAAK SQARAFDGNG 240 IASSPDLERA ITPLKRKVSE CDLDLNLHLG VRPRIEESTN YDDNDNGSSL SLSLSLSRAT 300 RFIEDANIDA TTENARRGTS TLDLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 62 | 117 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 62 | 117 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 62 | 117 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 62 | 117 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 4e-67 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 4e-67 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549900.1 | 0.0 | PREDICTED: uncharacterized protein LOC107849882 | ||||
TrEMBL | A0A1U8F2M9 | 0.0 | A0A1U8F2M9_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YSY2 | 0.0 | A0A2G2YSY2_CAPAN; uncharacterized protein LOC107849882 | ||||
STRING | PGSC0003DMT400068508 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4382 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-54 | G2-like family protein |