PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g11720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 143aa MW: 16405.9 Da PI: 7.0937 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 72.5 | 7.7e-23 | 33 | 133 | 83 | 182 |
GRAS 83 lfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177 + ++ P+ kf+h+ aN+aI e v + +++Hi+Dfd++qG+QW ++++a+ +R++ lR T +++ e++ ++ + eet++rL ++ + +g++++ CA09g11720 33 IKGKINPFGKFAHFGANSAIIEVVPDDaQTIHIVDFDMGQGIQWTPIIKAMGQRRKA---LRFTSIKKTEEEstsDQWRFEETKKRLVDYTNLFGLRLQ 128 556789******************88879*************************776...9*****998877888999********************9 PP GRAS 178 fnvlv 182 + ++ CA09g11720 129 VKEMT 133 98764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.144 | 1 | 142 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-20 | 33 | 133 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MDRQMSLHHL LAAYGEAMEN GHKELVEVII RSIKGKINPF GKFAHFGANS AIIEVVPDDA 60 QTIHIVDFDM GQGIQWTPII KAMGQRRKAL RFTSIKKTEE ESTSDQWRFE ETKKRLVDYT 120 NLFGLRLQVK EMTIEEFPSE LR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579488.1 | 2e-75 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2G2YSJ8 | 1e-101 | A0A2G2YSJ8_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068507 | 6e-65 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 2e-12 | GRAS family protein |