PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g08750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 133aa MW: 14538.1 Da PI: 7.4426 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.7 | 1.2e-11 | 12 | 54 | 55 | 97 |
DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++++sl++eA+ r+ +Pv+Gavg++++++++++ql++e++l CA09g08750 12 AALFQSLLFEACGRTVNPVHGAVGLLWTGNWHVCQLAVETVLK 54 6789*********************************998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 8.1E-8 | 12 | 52 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MEQRTYLSPA SAALFQSLLF EACGRTVNPV HGAVGLLWTG NWHVCQLAVE TVLKGGVLRL 60 LPEFSGVATS PAEFYSASEA NDVDLFRSRC SNFKSKRKVM DEIAEDLDLG LSPRTMVAAG 120 XXRNEGLFLH RR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016539448.1 | 3e-69 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 4e-24 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
Swissprot | Q9SZE8 | 4e-24 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2G2YTH4 | 4e-90 | A0A2G2YTH4_CAPAN; LOB domain-containing protein 38 | ||||
STRING | XP_009625187.1 | 3e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-26 | LOB domain-containing protein 39 |