PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g07480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 49328 Da PI: 5.8396 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 173 | 219 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+++ gR +kqc++rw+++l CA09g07480 173 KGQWTIEEDRLLIHLVEKFGIRKWSQIAQMLK-GRIGKQCRERWHNHL 219 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 226 | 267 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+ CA09g07480 226 DFWTEEEDRILIEAHGEVGNK-WAEIAKKLP-GRTENSIKNHWN 267 67*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.235 | 168 | 223 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-15 | 172 | 221 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 173 | 219 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.48E-32 | 173 | 266 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 174 | 224 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.81E-14 | 176 | 219 | No hit | No description |
SMART | SM00717 | 3.9E-17 | 224 | 272 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.225 | 224 | 274 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 225 | 273 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-15 | 228 | 267 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.89E-13 | 228 | 270 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MELDQSNNQN LSIHQPFFMP NNNILKPEID DDFCIDSKDY YLKDFEHLDL NFSNTTFNNF 60 SQNFMIDDDT NGTTYHDPFD PFSNIEDNFS SLGDFNFSSH ELTPFDQENG ESGGSKVMKN 120 NFHDDEFMKP NLNFVNVPDD QSSCVTGDNN LSSSIKKKLG GRGRPKKSSK SSKGQWTIEE 180 DRLLIHLVEK FGIRKWSQIA QMLKGRIGKQ CRERWHNHLR PDIKKDFWTE EEDRILIEAH 240 GEVGNKWAEI AKKLPGRTEN SIKNHWNATK RRQFSRRKCR TKWPRPSSLL QNYIKSLNLE 300 KGSTKKDTNP NGRVEYTGSV AENRNENLAN RPKRHANIAK VKVSPKLEAI EFCQDNNAGD 360 FDLSEVPEFA LGDNFFDENK SMDAFMEEIN PNVGTSIMPC NYEMPTLMMQ GEVNKEIDLI 420 EMISRVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-45 | 173 | 273 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-45 | 173 | 273 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219210 | 1e-107 | AC219210.1 Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence. | |||
GenBank | AC232944 | 1e-107 | AC232944.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 6 clone LE_HBa-24A16, complete sequence. | |||
GenBank | HG975518 | 1e-107 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576336.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A2G3C9U4 | 0.0 | A0A2G3C9U4_CAPCH; Myb-related protein A | ||||
STRING | Solyc06g071520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-72 | myb domain protein 98 |