PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g07450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 40330.9 Da PI: 6.4414 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++aa+++++g CA09g07450 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRG 77 6********.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.56E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.881 | 28 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-39 | 28 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.63E-19 | 28 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.3E-32 | 28 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-14 | 28 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MAMKEKVNGG MKVGNSKCNG VNNNKDVHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT 60 AEEAAKAYDA AAREFRGCKA KTNFPLPSEN QNGSDSGSPD ESFSGENRAH APSEFELTRC 120 LGAGGEGVGN GGRLAEVGLV RNGDTIVHAP TELDLTRLLG AGGEGGDNSG YSAEVGLVRN 180 GFPIFHHQPP IEAPMMSNRS SPAESYSGET IINTLQAPPE LYLMRRLVAG GDGDGNGGHS 240 AKVGYPFFHH QLSMAAPSES STGETVVNAP HAPPELDLTR RLGAVVQGAG YVSNGFPIFH 300 QQPAMAVLPN GQPMLLFDGN FVRTGLLNRP QPYQFEPVPA QLNSVTDRVG HSETDSSSVG 360 LSRRELNLDL NLAPPMEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 25 | 86 | 2 | 64 | ATERF1 |
3gcc_A | 4e-21 | 25 | 86 | 2 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541538.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_016541539.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 2e-48 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1U8E2M9 | 0.0 | A0A1U8E2M9_CAPAN; ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1U8ECE8 | 0.0 | A0A1U8ECE8_CAPAN; Ethylene-responsive transcription factor 4 | ||||
STRING | XP_009614490.1 | 3e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 7e-30 | erf domain protein 9 |