PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g06510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 294aa    MW: 33118.9 Da    PI: 7.3213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g06510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rWT+eE + + +a +++ ++    W  +a++++ g+t ++++  ++ 
       CA09g06510 28 RWTPEENKVFEEALALFDKDtpdKWYNVAAMIP-GKTVNDVIKQYRE 73
                     9********************************.********99986 PP

2Myb_DNA-binding46.21.1e-14137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
       CA09g06510 137 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 181
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-42376IPR009057Homeodomain-like
PROSITE profilePS512937.2392479IPR017884SANT domain
SMARTSM007174.5E-102577IPR001005SANT/Myb domain
SuperFamilySSF466895.67E-122782IPR009057Homeodomain-like
CDDcd001672.92E-72875No hitNo description
PfamPF002492.2E-72874IPR001005SANT/Myb domain
PROSITE profilePS5129421.106130186IPR017930Myb domain
SuperFamilySSF466891.93E-17132185IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-18133185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-12134181IPR009057Homeodomain-like
SMARTSM007173.5E-13134184IPR001005SANT/Myb domain
CDDcd001674.11E-11137182No hitNo description
PfamPF002493.8E-12137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNSEMGFLSP ATYIKNSSWL FEENKGTRWT PEENKVFEEA LALFDKDTPD KWYNVAAMIP  60
GKTVNDVIKQ YRELVDDISD IEAGLIPVPG YTTSNSFTLE WVNNQDGFHG FKQFYGPSGK  120
RGSSNRSSEH ERKKGVPWTE EEHRQFLLGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK  180
YFIRQLSGGK DKRRSSIHDI TVVNLTESKS TSPEDHKSAP TPQAQQHSQM NGMVKTLCEY  240
NSPNQESDIT FNSSSGGGLI TMPFRGAPSY ELEHGMHNIA LQGLQFGNYN TMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-182694876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542286.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-103DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U8E7720.0A0A1U8E772_CAPAN; Transcription factor DIVARICATA
TrEMBLA0A2G2YRK00.0A0A2G2YRK0_CAPAN; transcription factor DIVARICATA-like
TrEMBLA0A2G3BKN30.0A0A2G3BKN3_CAPCH; Transcription factor DIVARICATA
STRINGSolyc09g014250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-111MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]