PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g06330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 268aa    MW: 29034.3 Da    PI: 5.0073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g06330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161050547
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     T +Ed ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
       CA09g06330 10 TDDEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 50
                     89****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.061155IPR017930Myb domain
SMARTSM007172.2E-12553IPR001005SANT/Myb domain
CDDcd001678.04E-131051No hitNo description
Gene3DG3DSA:1.10.10.601.0E-181052IPR009057Homeodomain-like
SuperFamilySSF466891.0E-131055IPR009057Homeodomain-like
PfamPF002496.0E-141050IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQLIVLPLLT DDEDRIILQA HAIHGNKWAS IARLLPGRTD NAIKNHWNST LRRRCAELGR  60
LRSDSSNVME DVSVEKSKAS SEETQSCGDV NSLKAIEGKD VSSEENQEDN LYEDKSQGDV  120
QQSDAANDPH TLFRPVARVS AFSAYGSLNV PESQLQTPRL IPVQAPDLGI SKLLEGAFTD  180
RLVPHQCGHG CCGNANQAIN GSSLLGPEFV DYDEPPSFSS HELATLATEI SNVAWCKSGL  240
KNSSIEVIFN PTTRAVCGAS HLPSRPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A7e-191054751MYB PROTO-ONCOGENE PROTEIN
1mbk_A7e-191054751MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542331.10.0PREDICTED: transcription factor MYB44
TrEMBLA0A2G2YRH10.0A0A2G2YRH1_CAPAN; Uncharacterized protein
TrEMBLA0A2G3BLJ30.0A0A2G3BLJ3_CAPCH; Transcriptional activator Myb
STRINGSolyc09g011780.2.11e-166(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-58myb domain protein 1