PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g05210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 45062.8 Da PI: 7.6136 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 10 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd+ l++av + g++Wk+Ia+ ++ R++ qc +rwqk+l CA09g05210 10 RGGWTPEEDDTLKKAVSVYRGKCWKKIAELFP-DRSEVQCLHRWQKVL 56 789*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.2e-18 | 62 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l CA09g05210 62 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLP-GRIGKQCRERWHNHL 108 79******************99**********.*************97 PP | |||||||
3 | Myb_DNA-binding | 50.1 | 6.2e-16 | 114 | 157 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l+da++ +G++ W+ Ia+ ++ gR ++ +k++w++ CA09g05210 114 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRADNGIKNHWNS 157 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.419 | 5 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-14 | 6 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 10 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 12 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-12 | 13 | 56 | No hit | No description |
PROSITE profile | PS51294 | 31.885 | 57 | 112 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-30 | 59 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-18 | 61 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-17 | 62 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.76E-16 | 64 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 64 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 113 | 161 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.279 | 113 | 163 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 113 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-14 | 114 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-10 | 116 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
KTTGPIRRAR GGWTPEEDDT LKKAVSVYRG KCWKKIAELF PDRSEVQCLH RWQKVLNPEL 60 VKGPWTREED DKIIELVAKY GPIKWSVIAK SLPGRIGKQC RERWHNHLNP NIKKDAWTLE 120 EERALIDAHR IHGNKWAEIA KVLPGRADNG IKNHWNSSLR KKLDFYLATG NLPSVKSEEL 180 LVCSIKTSEA ADVVSSGAID ICKIENGWQV TEISASNGGP QAESTDSEIV RLEAQSPEED 240 AIQRIKQSTE SENRCDGWNI DSAVGRLQVF EAPFPCEIST CGRLYYEPPR SESCIPLDSD 300 LLNIGWAQCE SDASPSPSPN GFFTPPSTKD HSLYAQTPES VLRIAARSFN TPSILRKRKS 360 QGKPSTPTNK MRKSDGDFCK DKLIDACDKV QFDSSDKSSM DN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-69 | 10 | 163 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-69 | 10 | 163 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016542418.1 | 0.0 | PREDICTED: myb-related protein B | ||||
Refseq | XP_016542419.1 | 0.0 | PREDICTED: myb-related protein B | ||||
Swissprot | Q6R032 | 1e-116 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A2G2YR20 | 0.0 | A0A2G2YR20_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023012 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5461 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-119 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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