PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g05170

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 763aa MW: 86309.9 Da PI: 5.6912

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g05170	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.3	4.2e-112	388	759	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+cA+av+++d + a++lL++++++++p gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ sP+ k+s ++ N CA09g05170 388 LRTLLLNCAQAVAADDYRTANELLKQIRQHSTPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSPFSKISSFASN 483 6789**********************************************************999998...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 + I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak++e++++e+L++ CA09g05170 484 RSIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYAQSFNVPFEYHA-IAKKWETITVEDLNL 581 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++E laVn+ ++ ++l+de v+++s r+ vL+l+++++P+++++ + ++++ F++rf eal ++salfd+le+ +pre er +Ere++gre+ CA09g05170 582 GKDEFLAVNCLYRFKNLHDEAVKVDSSRTVVLNLIREINPDIFIHGVVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERGLIEREIFGREAL 680 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+aceg er+er et+++W++r+ a F++++++ + ++ a +r + + + ++e+s++l+lgWk+r+++++S+W CA09g05170 681 NVIACEGWERVERPETYKQWQARILGARFTQIAFDREeFVNRAVEKVRLGYHRDFIIDEDSQWLLLGWKGRTVYAISCW 759 *****************************986515677888888888888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.254	362	739	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-109	388	759	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MDPRFNDHPS SLSNFRLGNQ YLPISLDQRM RNGPRCGLIY SDQMLLNGPR LENSFVQHNL 60 GAVGFISGDR LPTNVESRTN LGAEDDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES 120 LELQAKEKSF YEALGTKNPP SPHQNLFTDR NSESPDDYVA GSIYNSTSNT IDSSSYLVDS 180 RAVNISKDYN SSCFKVPSFH DTSYSSVCSS NSGNIVDGFL DSPVCSFHIP DTYDESRSMW 240 NFHKGVEEAS KFLPTSNKLL NSVDINNLPP RELKTQAAYA AAQVEEKDEG EASPTEARGK 300 KNPQREDNHI EEERCGKQAA VFTESTLRSE EFDIVLLHSM GKGEEALEAY RQDLRNAKCI 360 NTVQISKGSK GGKGRGKKQG RKKEVIDLRT LLLNCAQAVA ADDYRTANEL LKQIRQHSTP 420 FGDGNQRLAH CFADGLEARL AGTGSQIYKA LVNKRTSAAD LLKAYHLYLA SSPFSKISSF 480 ASNRSIMIKA ENATRVHVID FGILYGFQWP TFIQRIAERE GGPPKLRITG IEFPQPGFRP 540 AERIEETGRR LADYAQSFNV PFEYHAIAKK WETITVEDLN LGKDEFLAVN CLYRFKNLHD 600 EAVKVDSSRT VVLNLIREIN PDIFIHGVVN GAYSAPFFVT RFREALFHFS ALFDMLETIV 660 PREIPERGLI EREIFGREAL NVIACEGWER VERPETYKQW QARILGARFT QIAFDREEFV 720 NRAVEKVRLG YHRDFIIDED SQWLLLGWKG RTVYAISCWI PV*

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MDPRFNDHPS SLSNFRLGNQ YLPISLDQRM RNGPRCGLIY SDQMLLNGPR LENSFVQHNL  60
GAVGFISGDR LPTNVESRTN LGAEDDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES  120
LELQAKEKSF YEALGTKNPP SPHQNLFTDR NSESPDDYVA GSIYNSTSNT IDSSSYLVDS  180
RAVNISKDYN SSCFKVPSFH DTSYSSVCSS NSGNIVDGFL DSPVCSFHIP DTYDESRSMW  240
NFHKGVEEAS KFLPTSNKLL NSVDINNLPP RELKTQAAYA AAQVEEKDEG EASPTEARGK  300
KNPQREDNHI EEERCGKQAA VFTESTLRSE EFDIVLLHSM GKGEEALEAY RQDLRNAKCI  360
NTVQISKGSK GGKGRGKKQG RKKEVIDLRT LLLNCAQAVA ADDYRTANEL LKQIRQHSTP  420
FGDGNQRLAH CFADGLEARL AGTGSQIYKA LVNKRTSAAD LLKAYHLYLA SSPFSKISSF  480
ASNRSIMIKA ENATRVHVID FGILYGFQWP TFIQRIAERE GGPPKLRITG IEFPQPGFRP  540
AERIEETGRR LADYAQSFNV PFEYHAIAKK WETITVEDLN LGKDEFLAVN CLYRFKNLHD  600
EAVKVDSSRT VVLNLIREIN PDIFIHGVVN GAYSAPFFVT RFREALFHFS ALFDMLETIV  660
PREIPERGLI EREIFGREAL NVIACEGWER VERPETYKQW QARILGARFT QIAFDREEFV  720
NRAVEKVRLG YHRDFIIDED SQWLLLGWKG RTVYAISCWI PV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-51	371	761	1	379	Protein SCARECROW
5b3h_D	2e-51	371	761	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542423.1	0.0	PREDICTED: scarecrow-like protein 9 isoform X1
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1U8E5A4	0.0	A0A1U8E5A4_CAPAN; scarecrow-like protein 9 isoform X1
STRING	PGSC0003DMT400022997	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein