PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g02910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 23929.9 Da PI: 5.8011 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.5e-10 | 106 | 150 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ ++++ ++G g+Wk+I+r+ +Rt+ q+ s+ qky CA09g02910 106 SWTELEHRSFLRGLDKYGRGDWKSISRYCVITRTPMQVASHSQKY 150 6***************************9989***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.33E-7 | 15 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.16 | 19 | 70 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.286 | 23 | 68 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 13.856 | 99 | 155 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-15 | 101 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-5 | 103 | 153 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-14 | 104 | 153 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 106 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.95E-7 | 106 | 146 | No hit | No description |
Pfam | PF00249 | 1.5E-8 | 106 | 150 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLEPFLVYQK EMRTDRTCNS SFWTKEEDKI FEITLAIYFK DNNLLRRMEE ELPGKSGDDI 60 INYYNILLED VEAIDSGRVP IPNYPELQSI SNQNSEADVE RQRGASWTEL EHRSFLRGLD 120 KYGRGDWKSI SRYCVITRTP MQVASHSQKY FKHLKAVPKK NRRASILDIT SADAEAAGTS 180 QAMPSTNNES IFPRQSTNAE QIIAVAGGVA * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553526.1 | 1e-118 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A2G2YQI1 | 1e-156 | A0A2G2YQI1_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400004392 | 6e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4454 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-44 | MYB family protein |