PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g02260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

BBR-BPC

Protein Properties

Length: 290aa MW: 32144.1 Da PI: 8.6983

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g02260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	308.1	3.1e-94	1	289	29	301
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse....... 116 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + erd++++al l++ s++ +++g ++ sg+k+i + qq+++ CA09g02260 1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERDDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMHRtiaeaah 99 899**************************************************99988877766444455677888888888866664433333333 PP GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..................skaekksidlv 197 ++d++++ + +++ ++ +++ +r+k+ +++k+ k + s++ ++ +++ ++ + +++k +l+ CA09g02260 100 GSMKDPTAGYLKDTDTSEAKVPKKV------------RRPKESRHNKQAKIPRVSKNGAESLNMQVIATTsddwanlqemdsdkdgdtQLTSWK-DNLG 185 3344444443333333333333333............333333333333333333333333333333322234444555555556663555665.59 PP GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296 ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydls p+DLkdhWAkHGtn+ CA09g02260 186 LNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIPLDLKDHWAKHGTNR 284 *************************************************************************************************** PP GAGA_bind 297 fvtir 301 + t++ CA09g02260 285 YSTLK 289 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.3E-83	1	289	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.9E-96	1	289	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNALIQERD DAIAALRLQD 60 SSTNDNNMVP DSPGNGTESG AKHIYNQQQM HRTIAEAAHG SMKDPTAGYL KDTDTSEAKV 120 PKKVRRPKES RHNKQAKIPR VSKNGAESLN MQVIATTSDD WANLQEMDSD KDGDTQLTSW 180 KDNLGLNQIN FDESAMPVPV CSCTGTPQPC YKWGHGGWQS ACCTTTISMY PLPQISNKRY 240 SRVGGRKMSG GAFSKLLNRL AAQGYDLSIP LDLKDHWAKH GTNRYSTLK*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982313	0.0	FJ982313.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560524.1	0.0	PREDICTED: barley B recombinant-like protein D
TrEMBL	A0A1U8FXT2	0.0	A0A1U8FXT2_CAPAN; barley B recombinant-like protein D
STRING	PGSC0003DMT400009137	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	5e-83	basic pentacysteine 6