PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g02220

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 205aa MW: 21756.3 Da PI: 8.3241

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g02220	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.1	4.7e-28	52	144	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...........k 89 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ + + Ll++a+pai+++tgt++ +++++ ++ s s s+s+ss + CA09g02220 52 NTKTKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTEGX----LLRKAEPAIIAATGTGTVPETQVtTTPSMSLSQSQSSVLapltmatpvsgS 144 579*************************************....*************999987775333333333322222344444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-22	53	142	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	16.069	55	105	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGSEMVLNHQ FPVSGTPSGG AASTTINSEP NDRNALAVAV IPKKKNSLSL ANTKTKDRHT 60 KVNGRGRRVR MPALCAARVF QLTKELGHRT EGXLLRKAEP AIIAATGTGT VPETQVTTTP 120 SMSLSQSQSS VLAPLTMATP VSGSANCGSY YSGFYSQQQP NCRLDLEYSG NPYRNMPFTA 180 LLLEPVNADD ECEEKVAGGE HVVD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542773.1	1e-139	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	1e-29	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A2G2YPZ2	1e-148	A0A2G2YPZ2_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400055541	6e-76	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-28	TCP family protein