PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g02130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 837aa    MW: 92585.5 Da    PI: 6.8167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g02130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-08103145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
       CA09g02130 103 AWTRQEEESFFSALRQVGKN-FERITSRVQ-SKNKDQVRHYYYRL 145
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.8E-1098150IPR009057Homeodomain-like
PROSITE profilePS5129312.8699150IPR017884SANT domain
SMARTSM007176.6E-6100148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-5102148IPR009057Homeodomain-like
CDDcd001671.91E-5103146No hitNo description
PfamPF002496.7E-6103145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MVGFIEIQCK ASTADDFNMQ MVQQVSLDCD TCLHPETFMC KDGFSGVTQN PAVALPVIPS  60
KDHPVSQQSV LTHDHAVTQL VSFSQDQVIL PQPAKRQTRQ WAAWTRQEEE SFFSALRQVG  120
KNFERITSRV QSKNKDQVRH YYYRLVRRMN KLLGPELCLD AKNSKETNAA MLRWWSLLEK  180
YSCKASKLHL KPRRFKIFVE TLESQLVKDR KKNVKRRPSQ GESSSTAAAS PSSHGRVSTN  240
DSRTVKVVLL DNKDAQKFGS GKGPSVKRNV TMGVNRGNVK VDSSVKNARH RRRTGSSSTA  300
AYKRWEKAAI AGVSLVADAA EHLERTTIDK DVGPVQNSQG INGFEHVGKD VHSLSTLSQI  360
FLKETNLQSC MKLKLQLFPV DEGTRRALEM DNHNPFLELT LSNRKKMSSV MEHLNRKWGS  420
SSIATGELVL FPFHVQVESL VRSLRWTKDT TQIAADVHNL IGRPPVFRLK YGWFPNAELG  480
TSQEPLSYTV PFVQNTNTNI TNEKNAEIPA SSHGSLVRFS KEPLPSNPRM TVTSSSNKLG  540
ESNLQASMGL NTYTSDHDET LPSHRRENWD ATTAEQDDMH DMQGTKASAL SAGDWEDSFT  600
NISVGDLLFD APDDEQTDCV DSALPGSSHF LHQTPLSCDS FDAAIAAHIY KHQSKADSQM  660
ALPPQASSIW NAEDTCDAFA FKKNVAFRDK EQRSSSNVGA ENSQRIAQSS SLVLDAGIKD  720
LPGNMESFTG ETAHEDPMDE CQSDAQALDG SAKDPNGLSG IYWTDSLGPL ELDAPSCRYH  780
NEDITLSDSF GGLNRLIVDS LDAFQNCSFF GLDKKEPASS TAKAVETSDL KIGAEV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476040.0EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542779.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1U8EFY20.0A0A1U8EFY2_CAPAN; TSL-kinase interacting protein 1
TrEMBLA0A2G2YQB10.0A0A2G2YQB1_CAPAN; TSL-kinase interacting protein 1 isoform X1
STRINGSolyc09g008100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86401719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1