PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g01840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 119aa MW: 13964.1 Da PI: 10.3014 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W eEde+l+ +v lG ++W++ a+ g++R++k+c++rw +yl CA09g01840 8 KGPWLDEEDERLAFVVSILGEHHWDALAKASGLRRSGKSCRLRWMNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.5e-17 | 63 | 106 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kqlG++ W++Ia+ ++ gRt++++k++w+++l CA09g01840 63 QITEDEENLIIKLQKQLGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106 569*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.038 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-28 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-10 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-6 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 27.109 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.19E-11 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MQEEKLRKGP WLDEEDERLA FVVSILGEHH WDALAKASGL RRSGKSCRLR WMNYLRPNLK 60 HGQITEDEEN LIIKLQKQLG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKA LIYEQGSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-27 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-27 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 2e-42 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541043.1 | 5e-82 | PREDICTED: myb-related protein MYBAS1-like | ||||
Swissprot | Q9SCP1 | 8e-50 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A1U8E189 | 1e-80 | A0A1U8E189_CAPAN; Transcription factor MYB48 | ||||
TrEMBL | A0A2G2YPV1 | 1e-80 | A0A2G2YPV1_CAPAN; myb-related protein MYBAS1-like | ||||
STRING | Solyc09g008390.1.1 | 3e-73 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 3e-52 | myb domain protein 27 |
Publications ? help Back to Top | |||
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