PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 119aa    MW: 13964.1 Da    PI: 10.3014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W  eEde+l+ +v  lG ++W++ a+  g++R++k+c++rw +yl
       CA09g01840  8 KGPWLDEEDERLAFVVSILGEHHWDALAKASGLRRSGKSCRLRWMNYL 55
                     79********************************************97 PP

2Myb_DNA-binding55.31.5e-1763106348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        T++E+ l++++ kqlG++ W++Ia+ ++ gRt++++k++w+++l
       CA09g01840  63 QITEDEENLIIKLQKQLGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106
                      569*****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.038355IPR017930Myb domain
SuperFamilySSF466894.59E-286102IPR009057Homeodomain-like
SMARTSM007173.4E-10757IPR001005SANT/Myb domain
PfamPF002496.7E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-19962IPR009057Homeodomain-like
CDDcd001671.91E-61055No hitNo description
PROSITE profilePS5129427.10956110IPR017930Myb domain
SMARTSM007172.4E-1560108IPR001005SANT/Myb domain
PfamPF002491.2E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2563109IPR009057Homeodomain-like
CDDcd001675.19E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MQEEKLRKGP WLDEEDERLA FVVSILGEHH WDALAKASGL RRSGKSCRLR WMNYLRPNLK  60
HGQITEDEEN LIIKLQKQLG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKA LIYEQGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2761102105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-27611056159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-27611056159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-2761102105C-Myb DNA-Binding Domain
1msf_C2e-2761102105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-42HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541043.15e-82PREDICTED: myb-related protein MYBAS1-like
SwissprotQ9SCP18e-50MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A1U8E1891e-80A0A1U8E189_CAPAN; Transcription factor MYB48
TrEMBLA0A2G2YPV11e-80A0A2G2YPV1_CAPAN; myb-related protein MYBAS1-like
STRINGSolyc09g008390.1.13e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.13e-52myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]