PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g01270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 484aa MW: 56441.9 Da PI: 8.0928 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.3 | 1e-28 | 56 | 141 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m e+g+ r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea CA09g01270 56 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsDEHGYLRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 141 8*************************************99******************************98..55667*******85 PP | |||||||
2 | trihelix | 55.2 | 1.8e-17 | 346 | 425 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrr........gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 W ++e+ Li++r++me+r+++ + + lWee+s+km+ g+ +s+++Ck+kw+++n + k+++ +k+++s CA09g01270 346 WLESEITRLIQLRTSMESRFQElgissrddQDDEHVLWEEISAKMAILGYDKSATMCKNKWSSINSYLMKCNKKRKDQNS 425 *********************854433322358999*************************************9998633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.364 | 49 | 114 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.042 | 53 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.18E-17 | 56 | 121 | No hit | No description |
Pfam | PF13837 | 5.0E-20 | 56 | 142 | No hit | No description |
PROSITE profile | PS50090 | 6.144 | 338 | 410 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.023 | 342 | 412 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.9E-13 | 344 | 426 | No hit | No description |
CDD | cd12203 | 2.58E-16 | 345 | 417 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MAHGLTTGTT TNHHQHHHQH EFLTNSSXXX XXXXXXXXXX XXXXXXXXXX XXXXGRWPRQ 60 ETLTLLEIRS RLDSKFKEAN QKGPLWDEVS RIMSDEHGYL RTGKKCREKF ENLYKYYKKT 120 KEGKAGRQDG KHYRFFRQLE ALYGETSNNI SSSASDALHQ GSHFPYNRVS NINQEPHNFH 180 HHNQAPKISD SLSLSNSSEF NTSSSDDSDQ DKMSKKRRPG KRSLKAKIKD FIDGQMRKLM 240 EKQEAWLEKM MKMIEHKEQE RILREEEWRN QETIRMEKEQ RFWANERAWI EARDAALMEA 300 VHKLSTGKDL RSTSSSNPRH AEDMVETLGQ NDKSDDVTHG LKDDNWLESE ITRLIQLRTS 360 MESRFQELGI SSRDDQDDEH VLWEEISAKM AILGYDKSAT MCKNKWSSIN SYLMKCNKKR 420 KDQNSTSLLC YNSNVQINNQ YYEADGSSSS FRYLMGDNHH HNQNLWENYE LKLSKGGDGG 480 GNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541505.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-118 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A2G3BIR9 | 0.0 | A0A2G3BIR9_CAPCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007016 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-115 | Trihelix family protein |
Publications ? help Back to Top | |||
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