PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA08g16690

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 972aa MW: 109368 Da PI: 6.1989

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA08g16690	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.2	1.4e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT++E+ l+ +v+++G+g W+tI + R+ ++k++w++ CA08g16690 5 KQKWTPDEEAALKAGVHKYGPGKWRTILKDPEfskvlSSRSNVDLKDKWRN 55 79*********************************9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.095	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	3.2E-15	2	67	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-8	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.85E-18	6	56	No hit	No description
SMART	SM00526	2.9E-15	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	9.8E-16	118	197	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.996	120	188	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	2.9E-14	120	187	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	4.9E-8	125	181	IPR005818	Linker histone H1/H5, domain H15
CDD	cd00073	1.45E-9	126	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MGAPKQKWTP DEEAALKAGV HKYGPGKWRT ILKDPEFSKV LSSRSNVDLK DKWRNMGVIA 60 NGWGSREKAR LALKRMNQAR KQDESSLAVI TEAKSDEKMA EARLATTSIG SPQIGGSKRS 120 IIRLDNLIME AISNLKESGG SNKTSIATYI EDQYWAPPNF KRLLSAKLKY LTATGRLTKV 180 KRKYRIATIP VLSDKRRIPS IQLLESRQRI SATVDQDDLK MLIKAQVDLE LTKMRSMTPQ 240 EAAAAAAQAV AEAEVSMAEA EDAARKADAA EAYAEAAQAL AEAAMKALKE RSSPRIPTLL 300 LACKYGKSGV CNSKGLPAMD GNLNDNAFLR ARIKELERER DELHKDIEQL CMQQAGPSYI 360 GMPTRMPLHS RIAGLEQEAE SLKKKLSACT RENQNLQEEL SEAYNIKGQL ADLHSAEVSK 420 NIEAEKQLKF FQGCVAAAFS ERDHAVMEAE KAKEQEELMS RGLHELQQRI EELSCELLEE 480 KILTATLQGD MDREERLDEI FKEVVHKFYE IRRQTLEDIE DVSWEDKCAC LLHDSSEMWT 540 FSNPGETSTS NYISSLEEQV ETLRKSLDNL QYKLLVGLEI ENHLKKKVRA LEKQKILSEE 600 KLRAQISAFR HYHSQHRVNI TSFLDEGFSH IKSAMNMVEE KLKDCSISER DLNSSQVDDL 660 QFSELECQDV PINNVDGSDL IFKRNQPSLT TTITVGNSDA SKALAVALNE KVETLLLLSQ 720 QEERHLLERN VNAALQKKVE ELQRNLLQVT NEKVKALMEL AQLNRDYQVL QEKVNEASRQ 780 GKSLGEIAVK RTLQEKDGRL KNLLKTSYLR RWTGIQDSDV NDADTHRDSE ANFADRRPTN 840 NVDFARMKIE NATLKESLES MEHLIRAVRR LRLSLLKFKE SAASEGMENC YSVSLDNIIN 900 EASQLKTALG SSLPLSWSAE ADSGSVSKHV EEETDNGHST RENMDFVSAA GFEMVELLVF 960 VAQLLKDYKC S*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MGAPKQKWTP DEEAALKAGV HKYGPGKWRT ILKDPEFSKV LSSRSNVDLK DKWRNMGVIA  60
NGWGSREKAR LALKRMNQAR KQDESSLAVI TEAKSDEKMA EARLATTSIG SPQIGGSKRS  120
IIRLDNLIME AISNLKESGG SNKTSIATYI EDQYWAPPNF KRLLSAKLKY LTATGRLTKV  180
KRKYRIATIP VLSDKRRIPS IQLLESRQRI SATVDQDDLK MLIKAQVDLE LTKMRSMTPQ  240
EAAAAAAQAV AEAEVSMAEA EDAARKADAA EAYAEAAQAL AEAAMKALKE RSSPRIPTLL  300
LACKYGKSGV CNSKGLPAMD GNLNDNAFLR ARIKELERER DELHKDIEQL CMQQAGPSYI  360
GMPTRMPLHS RIAGLEQEAE SLKKKLSACT RENQNLQEEL SEAYNIKGQL ADLHSAEVSK  420
NIEAEKQLKF FQGCVAAAFS ERDHAVMEAE KAKEQEELMS RGLHELQQRI EELSCELLEE  480
KILTATLQGD MDREERLDEI FKEVVHKFYE IRRQTLEDIE DVSWEDKCAC LLHDSSEMWT  540
FSNPGETSTS NYISSLEEQV ETLRKSLDNL QYKLLVGLEI ENHLKKKVRA LEKQKILSEE  600
KLRAQISAFR HYHSQHRVNI TSFLDEGFSH IKSAMNMVEE KLKDCSISER DLNSSQVDDL  660
QFSELECQDV PINNVDGSDL IFKRNQPSLT TTITVGNSDA SKALAVALNE KVETLLLLSQ  720
QEERHLLERN VNAALQKKVE ELQRNLLQVT NEKVKALMEL AQLNRDYQVL QEKVNEASRQ  780
GKSLGEIAVK RTLQEKDGRL KNLLKTSYLR RWTGIQDSDV NDADTHRDSE ANFADRRPTN  840
NVDFARMKIE NATLKESLES MEHLIRAVRR LRLSLLKFKE SAASEGMENC YSVSLDNIIN  900
EASQLKTALG SSLPLSWSAE ADSGSVSKHV EEETDNGHST RENMDFVSAA GFEMVELLVF  960
VAQLLKDYKC S*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233135	1e-101	AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence.
GenBank	HG975440	1e-101	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-101	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539420.1	0.0	PREDICTED: myosin-16 isoform X1
Refseq	XP_016539421.1	0.0	PREDICTED: myosin-16 isoform X1
TrEMBL	A0A2G3AVM6	0.0	A0A2G3AVM6_CAPCH; Telomere repeat-binding factor 2
STRING	XP_009606148.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7683	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-83	telomere repeat binding factor 1