PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g15740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CAMTA
Protein Properties Length: 1019aa    MW: 114798 Da    PI: 6.138
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g15740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.86.7e-56201363118
        CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                 +e ++rwl++ ei++iL n++k++lt e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +fqrr+yw
  CA08g15740  20 SEvQHRWLRPAEICEILRNYRKFHLTPEAPYRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNFQRRSYW 118
                 5559*********************************************************************************************** PP

        CG-1 101 lLeeelekivlvhylevk 118
                 +Le++l +iv+vhylevk
  CA08g15740 119 MLEQDLMHIVFVHYLEVK 136
                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.59115141IPR005559CG-1 DNA-binding domain
SMARTSM010763.1E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038594.2E-4922135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.9E-6469555IPR013783Immunoglobulin-like fold
PfamPF018335.0E-7470555IPR002909IPT domain
SuperFamilySSF812962.33E-17470556IPR014756Immunoglobulin E-set
SuperFamilySSF484033.58E-15659764IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.4E-15666768IPR020683Ankyrin repeat-containing domain
CDDcd002041.24E-12668762No hitNo description
PROSITE profilePS5029716.335670774IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.484703735IPR002110Ankyrin repeat
SMARTSM002480.0036703732IPR002110Ankyrin repeat
SMARTSM000155.8877899IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.023878907IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.02E-7878928IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0029879898IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0012900922IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542901925IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5903922IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MADCGSDPSG FRLDITQILS EVQHRWLRPA EICEILRNYR KFHLTPEAPY RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKV NVGYIRSVKF AHSNYQNECS LSDSMPTGHK KLASANADSA  180
SLASTLTEAH EEAESEDNHH ACSRFHSYPD RASGMDSHLV ESRDTICSSY GSPQSSVEYT  240
SLPSIDGAGK CDLGNFASGP QRTVDLGYGF PVSQHCSNGE MVGQDDFKNN LSVHENWQCS  300
FGDSPLQFHG QNVNQDLIAD LSYGLGNSFQ NRSLPSDLLS VRGQSYLYPD AQEGQLTQLD  360
LQYLNSLLEV QGDMNQESNM DMIELGDYST VKQPQLSSVK MEEGLKKVDS FSRWVAKELE  420
DVEELHMQPN NRISWNAIDT EEEDSYLPNR LHMDSDSLNP SLSQEQVFSI IDFSPNWAYS  480
NFETKVLITG RFLKSEGELV EYKWSCMFGE VEVPAEVLAD GVLRCHAPPH KPGVLPFYVT  540
CSNRLACSEV REFEYRFGPF QEFGAANVST TEMHLLERIE NLLSLGPVSN CRISDTMEAA  600
KDKQSTVNKI IFMMEEENQQ MIERASDYDT SQCRVKEDLF LESKLKQNFY AWLIHQVTDD  660
GRGRTLLDDE GQGILHLVAA LGYDWALKPI LASGVSVDFR DINGWTALHW AAFYGREKTV  720
VGLVSLGASP GALTDPSAEF PLARTPADLA SANGHKGISG FLAESSLTTH LTKLTVSDAK  780
EELASEGCEA KVGETVTERV AVTTTGNDVP DVLSLKDSLA AIRNATQAAA RIHQIFRVQS  840
FQRKQIIEHS DDELSSDENA LSILASKSCK LGQNNGIAHA AAIQIQKKFR GWNKRKEFLL  900
IRQKIVKIQA HIRGHQVRKK YKPIIWSVGI LEKVILRWRR KRSGLRGFKS EEVMNKPSTQ  960
DDSLPEDDYD FLKEGRKQTE VRMQKALARV KSMTQYPEGR AQYRRLLTAA EGLREVKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A1e-13470559992calmodulin binding transcription activator 1
2cxk_B1e-13470559992calmodulin binding transcription activator 1
2cxk_C1e-13470559992calmodulin binding transcription activator 1
2cxk_D1e-13470559992calmodulin binding transcription activator 1
2cxk_E1e-13470559992calmodulin binding transcription activator 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539240.10.0PREDICTED: calmodulin-binding transcription activator 2 isoform X1
RefseqXP_016539241.10.0PREDICTED: calmodulin-binding transcription activator 2 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1U8DYK60.0A0A1U8DYK6_CAPAN; calmodulin-binding transcription activator 2 isoform X2
TrEMBLA0A1U8E7F60.0A0A1U8E7F6_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y3330.0A0A2G2Y333_CAPAN; calmodulin-binding transcription activator 2 isoform X1
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]