PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g15310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 309aa    MW: 35128.9 Da    PI: 8.1656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g15310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.2e-121452644
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +  r+ tf kR++g+lKK +E  +LC+++ ++i+++++g
  CA08g15310 14 EKARNATFKKRKEGLLKKLYEFTTLCNVDGLMILYGPNG 52
                567999*******************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.764161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-14160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-16163IPR002100Transcription factor, MADS-box
CDDcd002661.21E-17259No hitNo description
PRINTSPR004042.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAKLKMEL ICKEKARNAT FKKRKEGLLK KLYEFTTLCN VDGLMILYGP NGSDPEIWTN  60
SSGNSSSSSS LQQEEIQKLI DQYKKESNLQ SGSTKTFDLS DYFVDRNKKV EEELMKLRKM  120
NMEKRYPSWS GSMDRLSEIE LRQVLTSLDY KVAEVKSRIN SVRGNFPREY LMGGETTRLS  180
QFTHMVQGGI ELGGYNYEQL LQVPIYPYCN YSHQEMMMLT RTENNWQYNS NGASSSSTSG  240
GIGNSNMMCA ALYEATTTHN MMGNNQLTYG AAAPTILPPP PCIIFPMSQM QHSWNKNEQD  300
DNVKFLPY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582281.10.0PREDICTED: MADS-box transcription factor 3-like
TrEMBLA0A2G2Y1M30.0A0A2G2Y1M3_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000641201e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-19M-type_MADS family protein